### Journal Papers

Journal Papers produced by Center Participants from 2011 - 2016. They are listed in our Annual Reports each year, respectively.

- S. Park and R. L. Rivest,. "Towards Secure Quadratic Voting" Cryptology ePrint Archive, commissioned to appear in Public Choice 2017.
- W. Ko and P. R. Kumar. "Outlier Rejection for Networked Control Systems based on Middleware" Submitted to 14th Annual IEEE Consumer Communications & Networking Conference (CCNC 2017). Las Vegas, January 8-11, 2017. Submitted July 8, 2016. This material is based upon work partially supported by NSF under Contract Nos. ECCS-1547075 and Science & Technology Center Grant. CCF-0939370, the U.S. Army Research Office under Contract No W911NF-15-1-0279, and NPRP grant NPRP 8-1531-2-651 from the Qatar National Research Fund, a member of Qatar Foundation.
- M. Rao, T. Javidi, Y. Eldar, and A. Goldsmith. "Non-Asymptotic Analysis of Learning Time Series with Structural Contraints" IEEE ICASSP, 2017.
- P. Jacquet and W. Szpankowski. . "Average Size of a Suffix Tree for Markov Sources." AofA. Krakow, 2016.
- O. Ozel and V. Anantharam. "State estimation in energy harvesting systems" Workshop on Information Theory and its Applications, (ITA). San Diego, January 31- February 05, 2016.
- Y. Altug, H. V. Poor and S. Verdu. "On Channel Dispersion per Unit Cost" Proc. IEEE Int. Symposium on Information Theory, pp. 2429–2433.
- M. Ghaffari and B. Haeupler. "Distributed Algorithms for Planar Networks I: Planar Embedding" Proceedings of the ACM Symposium on Principles of Distributed Computing (PODC), pages 29-38, July 2016.
- A. Collins and Y. Polyanskiy. "Dispersion of the coherent MIMO block-fading channel" IEEE International Symposium on Information Theory.
- A. Goldsmith, J. Kim, and Y. Murin. "Tracking Epileptic Seizure Activity via Information Theoretic Graphs" Asilomar Conference on Signals, Systems and Computers, 2016.
- A. Magner, D. Kihara, and W. Szpankowski. "A Study of the Boltzmann Sequence-Structure Channel" ISIT. Barcelona, 2016.
- N. Veldt, D. F. Gleich, and M. W. Mahoney. "A Simple and Strongly-Local Flow-Based Method for Cut Improvement" International Conference on Machine Learning, 1938-1947, 2016.
- D. Shaviv, A. Ozgur. "Universally near-optimal online power control for energy harvesting nodes" IEEE ICC.
- A. Jain, S. Kulkarni and S. Verdu. "Energy Efficiency of Wireless Cooperation" Fifty-forth Annual Allerton conference on Communication, Control, and Computing. University of Illinois, Monticello, Illinois, Sep. 28-30, 2016.
- A. Pananjady, M. Wainwright and T. Courtade. "Linear Regression with an Unknown Permutation: Statistical and Computational Limits" 54th Annual Allerton Conference on Communication, Control, and Computing. Monticello, IL, October 2016.
- X. Liu and P. R. Kumar. "Towards Safety of Transportation Systems with a Mixture of Automated and Human-Driven Vehicles" Proceedings of the Workshop on Intelligent Transportation Systems (ITS), 8th International Conference on Communication Systems & Networks COMSNETS 2016, pp.1-3,January 5-9, 2016. Submitted November 28, 2016. This material is based upon work partially supported U.S. Army Research Office under Contract No. W911NF-15-1-0279, by NSF under Contract Nos. CPS-1239116, Science & Technology Center Grant CCF-0939370, AFOSR Contract FA9550-13-1-0008, and NPRP grant 6-784-2-329 from the Qatar National Research Fund, a member of Qatar Foundation.
- M. Ghaffari and B. Haeupler. "Distributed Algorithms for Planar Networks II: Low-Congestion Shortcuts, MST, and Min-Cut" ACM-SIAM Symposium on Discrete Algorithms (SODA), pages 202-219, January 2016.
- P. Robles, S. Moreno, and J. Neville. "Sampling of Attributed Networks from Hierarchical Generative Models" Proceedings of the 22nd ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2016.
- M. Coskun, A. Grama, and M. Koyuturk. "Efficient Processing of Network Proximity Queries via Chebyshev Acceleration" ACM Special Interest Group on Knowledge Discovery in Databases (SIGKDD).
- K. Venkat, J. Jiao and T. Weissman. "Mutual Information, Relative Entropy and Estimation Error in Semi-Martingale Channels" Int. Symp. Information Theory. Barcelona, Spain, July 10 - 15, 2016.
- E. Shafieepoorfard and M. Raginsky. "Sequential empirical coordination under an output entropy constraint" IEEE Conference on Decision and Control.
- V. Jamali, N. Farsad, R. Schober, and A. Goldsmith. "Non-Coherent Multiple-Symbol Detection for Diffusive Molecular Communications" ACM International Conference on Nanoscale Computing and Communication (NanoCom), 2016.
- M. Rafieisakhaei, A.H. Tamjidi, S. Chakravorty and P. R. Kumar. "Feedback Motion Planning Under Non-Gaussian Uncertainty and Non-Convex State Constraints" Proceedings of the IEEE International Conference on Robotics and Automation (ICRA 2016),pp. 4238 - 4244, May 16-21, 2016. Stockholm, Sweden. Submitted September 15, 2015. This material is based upon work partially supported by AFOSR Contract No. FA9550-13-1-0008, the U.S. Army Research Office under Contract No. W911NF-15-1-0279, and the NSF under Contract Nos. CNS-1302182 and Science & Technology Center Grant CCF-0939370.
- Y. Baryshnikov and E. Schlafly. "Cyclicity in Multivariate Time Series and Applications to Functional MRI Data" Conference on Decision and Control (CDC).
- R. Kolte, A. Ozgur and H. Permuter. "The Capacity of the State-Dependent Semi-deterministic Relay Channel" International Zurich Seminar on Communications, 2016.
- T. Courtade. "Strengthening the entropy power inequality" IEEE International Symposium on Information Theory.
- Y. Han, J. Jiao and T. Weissman. "Minimax Estimation of the L1 Distance" Int. Symp. Information Theory. Barcelona, Spain, July 10 -15, 2016.
- S. Mohammadi and A. Grama. "DeNovo Identfication of Cell-Type Hierarchy with Application to Compound Marker Detection" ACM Bioinformatics and Computational Biology (BCB), 2016.
- Y. Shkel and S. Verdu. "A single-shot approach to lossy source coding under logarithmic loss" Proceedings of the IEEE International Symposium on Information Theory, pp. 2953–2957.
- B. Satchidanandan and P. R. Kumar. "Secure Control of Networked Cyber-Physical Systems" To appear in Proceedings of 55th IEEE Conference on Decision and Control. Las Vegas, December 12-14, 2016. Submitted March 15, 2016. Final version submitted on Aug 31, 2016. This paper is partially based on work supported by NSF Science and Technology Center Grant CCF-0939370, NSF Contract Nos. CNS-1646449, CCF-1619085, and CNS-1302182, and the US Army Research Office under Contract No. W911NF-15-1-0279.
- Y. Baryshnikov, C. Chen, and H. Wang. "A design of hybrid feedback stabilization on 1D coverage with topological perspectives" American Control Conference (ACC), pp. 5154-5160.
- D. Kumar and D. Xu, I. Greenberg, A. Cadle, D. Thompson, U. Wolz. "Creative Computation in High School" Proceedings of the 47th ACM SIGCSE Technical Symposium on Computer Science Education, pages 273-278, 2016.
- I. Sason and S. Verdu. "f-Divergence Inequalities via Functional Domination" International Conference on the Science of Electrical Engineering (ICSEE). Eilat, Israel, Nov. 16-18, 2016.
- D. G. Harris, J. Schneider, and H. Su. "Distributed (A+1)-coloring in Sublogarithmic Rounds" Proceedings of the 48th Annual Symposium on the Theory of Computing (STOC), pages 465-478, June 2016.
- S. Mohammadi and A. Grama. "A convex optimization approach for identification of human tissue-specific interactomes" Intelligent Systems for Molecular Biology (ISMB), July 2016 .
- X. Wu, A. Ozgur. "Improving on the cut-set bound via a geometric analysis of typical sets" International Zurich Seminar on Communications, 2016.
- M. Drmota, A. Magner and W. Szpankowski, . "Asymmetric Renyi Problem and PATRICIA Tries" AofA. Krakow, 2016.
- D. Pavlichin and T. Weissman. "Chained Kullback-Leibler Divergences" Int. Symp. Information Theory. Barcelona, Spain, July 10 - 15, 2016.
- E. Ben-Sasson, A. Chiesa, A. Gabizon and M. Virza. "Quasi-Linear Size Zero Knowledge from Linear-Algebraic PCPs" Theory of Cryptography Conference (TCC), pp. 33-64.
- M. Ghaffari and C. Newport. "How to Discreetly Spread a Rumor in a Crowd" 30th International Symposium on Distributed Computing (DISC), September 2016.
- D. Shaviv, A. Ozgur, H. Permuter. "Capacity of Remotely Powered Communications" IEEE International Symposium on Information Theory (ISIT), 2016.
- D. Cullina, M. Dalai and Y. Polyanskiy. "Rate-distance tradeoff for codes above graph capacity" IEEE International Symposium on Information Theory.
- M. Hernaez, I. Ochoa and T. Weissman. "A cluster-based approach to compression of Quality Scores" Proc. Data Compression Conference (DCC). Snowbird, Utah, March 29-April 1, 2016.
- Y. Murin, N. Farsad, M. Chowdhury, and A. Goldsmith. "Communication over Molecular Timing Channels with Alpha-Stable Noise" IEEE Global Communications Conference (GLOBECOM), 2016.
- X. Wu, A. Ozgur. "Improving on the cut-set bound for general primitive relay channels" IEEE International Symposium on Information Theory (ISIT), 1675-1679, 2016.
- S. Kamath and S. Verdu. "Estimation of entropy rate and Renyi entropy rate for Markov chains" Proc. 2016 IEEE Int. Symposium on Information Theory, pp. 685?689. Barcelona, Spain, July 11-15, 2016.
- Y. Polyanskiy and Y. Wu . "Converse bounds for interference channels via coupling and proof of Costa's conjecture" IEEE Int. Symp. Inf. Theory (ISIT). Barcelona, Spain, Jul. 2016.
- A. Bloniarz, C. Wu, B. Yu and A. Talwalkar. "Supervised neighborhoods for distributed nonparametric regression" Proceedings of AISTATS.
- M. Ghaffari and C. Newport. "Leader Election in Unreliable Radio Networks" International Colloquium on Automata, Languages, and Programming (ICALP), July 2016.
- J. Liu, T. A. Courtade, P. Cuff, and S. Verdu. "Brascamp-Lieb inequality and its reverse: An information theoretic view" IEEE International Symposium on Information Theory (ISIT). Barcelona, July 2016.
- I. Shomorony, G. M. Kamath, F. Xia, T. Courtade, and D. Tse. "Partial DNA assembly: A rate-distortion perspective" IEEE International Symposium on Information Theory (ISIT). Barcelona, July 2016.
- F. Farnia and D. Tse. "A minimax approach to supervised learning" NIPS.
- S. Holzer and N. Lynch. "Brief Announcement - Beeping a Maximal Independent Set Fast" DISC, 2016.
- Y. Murin, N. Farsad, M. Chowdhury, and A. Goldsmith. "On Time-Slotted Communication over Molecular Timing Channels" ACM International Conference on Nanoscale Computing and Communication (NanoCom), 2016.
- R. Xu, J. Chen, T. Weissman and J. Zhangand. "When is Noisy State Information at the Encoder as Useless as No Information or as Good as Noise-Free State?" Int. Symp. Information Theory. Barcelona, Spain, July 10 - 15, 2016.
- N. Farsad, Y. Murin, A. W. Eckford, and A. Goldsmith,. "On the Capacity of Diffusion-Based Molecular Timing Channels" IEEE International Symposium on Information Theory (ISIT), 2016.
- M. Raginsky. "Channel polarization and Blackwell measures" IEEE International Symposium on Information Theory, 2016.
- M. Ghaffari and M. Parter. "Near-Optimal Distributed Algorithms for Fault-Tolerant Tree Structures" ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), pages 387-396, July 2016.
- J. Liu, T. A. Courtade, P. Cuff and S. Verdu. "Smoothing Brascamp- Lieb Inequalities and Strong Converses for Common Randomness Generation" Proc. 2016 IEEE Int. Symposium on Information Theory, pp. 1043-1047. Barcelona, Spain, July 11-15, 2016.
- N. Farsad, Y. Murin, W. Guo, C. Chae, A. Eckford, and A. Goldsmith. "On the Impact of Time-Synchronization in Molecular Timing Channels" IEEE Global Communications Conference.
- C. Musco, H. Su, and N. Lynch. "Ant-Inspired Density Estimation via Random Walks" Proceedings of the ACM Symposium on Principles of Distributed Computing (PODC), pages 469-478, July 2016. http://arxiv.org/abs/1603.02981.
- W. Yang, A. Collins, G. Durisi, Y. Polyanskiy, and H. V. Poor. "A beta-beta achievability bound with applications" IEEE Int. Symp. Inf. Theory (ISIT). Barcelona, Spain, July 2016.
- N. Farsad, Y. Murin, M. Rao, and A. Goldsmith. "On the Capacity of Diffusion-Based Molecular Timing Channels with Diversity" Asilomar Conference on Signals, Systems, and Computers, accepted, 2016.
- M. Raginsky, A. Rakhlin, M. Tsao, Y. Wu, and A. Xu. "Information-theoretic analysis of stability and bias of learning algorithms" IEEE Information Theory Workshop, 2016.
- M. Ghaffari and M. Parter. "MST in Log-Star Rounds of Congested Clique" Proceedings of the ACM Symposium on Principles of Distributed Computing (PODC), pages 19-28, July 2016.
- J. Liu, P. Cuff and S. Verdu. "Key Generation with Limited Interaction" Proc. 2016 IEEE Int. Symposium on Information Theory, pp. 2918-2922. Barcelona, Spain, July 11-15, 2016.
- J. Hui, I. Shomorony, K. Ramchandran, and T. Courtade. "Overlap-based genome assembly from variable-length reads" IEEE International Symposium on Information Theory (ISIT). Barcelona, July 2016.
- C. Musco, H. Su, and N. Lynch. "Ant-Inspired Density Estimation via Random Walks (Extended Abstract)" 4th Workshop on Biological Distributed Algorithms, July 2016.
- M. Ghaffari. "An Improved Distributed Algorithm for Maximal Independent Set" ACM-SIAM Symposium on Discrete Algorithms (SODA), pp. 270-277.
- N. Farsad, B. H. Yilmaz, C.-B. Chae, and A. Goldsmith. "Energy model for vesicle-based active transport molecular communication" IEEE International Conference on Communications (ICC), 2016.
- M. Rao, A. Kipnis, T. Javidi, Y. Eldar, and A. Goldsmith. "System Identification with Partial Samples: Non-Asymptotic Analysis" Control Decision Conference (CDC), IEEE, 2016.
- B. P. Wiseman, Y. Chen, L. Xie and P.R. Kumar. "PMU-based Reduced-order Modeling of Power System Dynamics via Selective Modal Analysis" Submitted to Proceedings of the IEEE PES Transmission and Distribution Conference and Exposition (T&D), pp. 1-5. Dallas, May 3, 2016. Submitted August 10, 2015. This material is based upon work partially supported by NSF under Contract No. CPS-1239116, ECCS-1150944, DGE-1303378, and NSF Science & Technology Center Grant CCF-0939370.
- Y. Chen, H. Chintakunta, L. Xie, Y. Baryshnikov and P. R. Kumar. "Persistent-Homology-based Detection of Power System Low-frequency Oscillations using PMUs" IEEE Symposium on Signal and Information Processing for Smart Grid Infrastructures (GlobalSIP).
- M. Ghaffari and M. Parter. "A Polylogarithmic Gossip Algorithm for Plurality Consensus" Proceedings of the ACM Symposium on Principles of Distributed Computing (PODC), pages 117-126, July 2016.
- J. Tang, D. Wang, Y. Polyanskiy, and G. Wornell. "Defect tolerance: fundamental limits and examples" 2016 IEEE Int. Symp. Inf. Theory (ISIT). Barcelona, Spain, July 2016.
- K. M. Konwar, N. Prakash, E. Kantor, M. Medard, N. Lynch, and A. A. Schwarzmann. "Storage-Optimized Data-Atomic Algorithms for Handling Erasures and Errors in Distributed Storage Systems" 30th IEEE International Parallel & Distributed Processing Symposium (IPDPS), pp. 720-729.
- H.A. Inan, A. Ozgur. "Online power control for the energy harvesting multiple access channel" IEEE Wiopt, 2016.
- I. Ochoa, M. Hernaez, R. Goldfeder, T. Weissman and E. Ashley. "De- noising of Quality Scores for Boosted Inference and Reduced Storage" Proc. Data Compression Conference (DCC). Snowbird, Utah, March 29-April 1, 2016.
- J. Gaither and M. D. Ward. "Variance of the Internal Profile in Suffix Trees" Proceedings of the 27th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms.
- I. Alodah and J. Neville. "Combining Gradient Boosting Machines with Collective Inference to Predict Continuous Values" Proceedings of the 6th International Workshop on Statistical Relational AI, IJCAI.
- A. Kipnis, Y. C. Eldar and A. J. Goldsmith. "Information rates of sampled Wiener processes" IEEE International Symposium on Information Theory (ISIT), 2016.
- M. Chowdhury and A. Goldsmith. "Capacity of Block Rayleigh Fading Channels Without CSI" Proceedings of the International Symposium on Information Theory.
- K. S. Tatwawadi, I. Ochoa, M. Hernaez and T. Weissman. "Fast retrieval from compressed collections of genomic variants" Proc. of 15th European Conference on Computational Biology (ECCB). The Hague, Netherlands, September 3-7, 2016.
- H.A. Inan, D. Shaviv, A. Ozgur. "Capacity of the energy harvesting Gaussian MAC" IEEE International Symposium on Information Theory (ISIT), 2744-2748, 2016.
- I. Ochoa, A. No, M. Hernaez and T. Weissman. "CROMqs: rateless lossy compression of quality scores" Proc. IEEE Inf. Th. Workshop (ITW). Cambridge, United Kingdom, September 11-14, 2016.
- W. Ko, B. Satchidanandan and P. R. Kumar. "Theory and Implementation of Dynamic Watermarking for Cybersecurity of Advanced Transportation Systems" Submitted to International Workshop on Cyber-Physical Systems Security (CPS-Sec). Philadelphia, October 17-19, 2016, Submitted August 14, 2016. This material is based upon work partially supported by NSF under Contract Nos. CNS-1646449 and Science & Technology Center Grant CCF-0939370, the U.S. Army Research Office under Contract No. W911NF-15-1-0279, and NPRP grant NPRP 8-1531-2-651 from the Qatar National Research Fund, a member of Qatar Foundation.
- W. Ko and P. R. Kumar. "Cross-layer Design for Cyber-Physical Systems of Coordinated Networked Vehicles over Bi-Directional Middleware" Proceedings of the American Control Conference, pp. 6459-6454.
- N. Farsad, and A. Goldsmith. "A Molecular Communication System Using Acids, Bases and Hydrogen Ions" IEEE International workshop on Signal Processing advances in Wireless Communications (SPAWC), 2016.
- A. Kipnis, S. Rini and A. J. Goldsmith. "Multiterminal Compress-and-Estimate Source Coding" IEEE International Symposium on Information Theory (ISIT), 2016.
- G. Vazquez-Vilar, A. Guillen and S. Verdu. "Hypothesis testing and quasi-perfect codes" International Zurich Symposium on Communications, Zurich, Switzerland, Mar. 2-4, 2016.
- A. Javanmard, A. Bhaskar, T. Courtade, D. Tse. "Ancestry localization from genotype data under general probabilistic models of spatial evolution and a correction for population stratification in genome-wide association studies" Probabilistic Modeling in Genomics.
- X. Liu, K. Ma and P. R. Kumar. "Towards Provably Safe Mixed Transportation Systems with Human-driven and Automated Vehicles" Submitted to Proceedings of 54th IEEE Conference on Decision and Control, pp. 4688-4694. Osaka, Japan, December 15-18, 2015. Submitted March 24, 2015. This material is based upon work partially supported by NSF under Contract Nos. CPS-1239116 Science & Technology Center Grant CCF-0939370, and NPRP grant 6-784-2-329 from the Qatar National Research Fund, a member of Qatar Foundation.
- A. Kipnis, Y. C. Eldar and A. J. Goldsmith. "Optimal trade-off between Sampling Rate and quantization precision in AD conversion" 53rd Annual Allerton Conference on Communication, Control, and Computing, October 2015.
- M. Razaviyayn, J. Guo, E. Tseng, D. Tse. "CONVEX: De Novo Transcriptome ErrorCorrection via Convexification" Genome Informatics, Cold Spring Harbor, 2015.
- J. An, P. R. Kumar and L. Xie. "On Transfer Function Modeling of Price Responsive Demand: An Empirical Study" IEEE Power and Energy Society General Meeting, pp.1-5.
- A. Kipnis, S. Rini and A. Goldsmith. "Indirect rate-distortion function of a binary i.i.d source" IEEE Information Theory Workshop (ITW), October 2015.
- S. Gupta, Y. Kihara, M. R. Maurya, P. C. Norris, E. A. Dennis and S. Subramaniam. "A systems Biology Approach to Metabolic Antagonism Between Omega-3 and Omega-6 Fatty Acids During Macrophage Inflammatory Response" Biomedical Engineering Society Annual Meeting, P-Th-109. Tampa, FL, Oct. 7-10, 2015.
- M. R. Maurya, L. Szpankowski, L. S. B. Goldstein and S. Subramaniam. "Dynamic Modeling of Molecular Motor Association with Axonal Amyloid Precursor Protein Vesicles" AIChE Annual Meeting. Salt Lake City, UT, Nov. 8 ? Nov. 13, 2015.
- A. Pananjady and T. Courtade. "Compressing Sparse Sequences under Local Decodability Constraints" IEEE International Symposium on Information Theory (ISIT). Hong Kong, July 2015.
- M. Ghaffari, A. Karrenbauer, F. Kuhn, and C. Lenzen. "Near-Optimal Distributed Maximum Flow. " ACM Symposium on Principles of Distributed Computing (PODC), pages 81-90, July 2015.
- I. Sason and S. Verdu. "Upper Bounds on the Relative Entropy and Renyi Divergence as a Function of Total variation Distance for Finite Alphabets" Proc. 2015 IEEE Information Theory Workshop. Jeju, South Korea, Oct. 11-15, 2015.
- X. Wu, A. Ozgur. "Cutset Bound is Loose for Gaussian Relay Networks" Allerton Conference on Communication, Control and Computing, September 2015.
- A. Javanmard, A. Bhaskar, T. Courtade, D. Tse. "Ancestry localization from genotype data under general probabilistic models of spatial evolution and a correction for population stratification in genome-wide association studies" Probabilistic Modeling in Genomics, Cold Spring Harbor, 2015.
- M. Ghaffari, C. Musco, T. Radeva, N. Lynch. "Distributed House-Hunting in Ant Colonies" ACM Symposium on Principles of Distributed Computing (PODC), pages 57-66, July 2015. arXIV:1505.03799.
- T. Courtade and A. Özgür. "Approximate Capacity of Gaussian Relay Networks: Is a Sublinear Gap to the Cutset Bound Plausible?" IEEE International Symposium on Information Theory.
- G.M. Kamath, E. Sasoglu, D. Tse. "Optimal haplotype assembly from high-throughput matepair reads" Information Theory (ISIT), IEEE International Symposium on, pp. 914- 918, 2015.
- S. Kylasa, G. Kollias and A. Grama. "Social ties and checkin sites: Connections and latent structures in Location Based Social Networks" IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), 2015.
- F. Farnia, M. Razaviyayn, S. Kannan, D. Tse. "Minimum HGR correlation principle: From marginals to joint distribution" Information Theory (ISIT), IEEE International Symposium on, pp. 1377-1381, 2015.
- R. Singh and P. R. Kumar. "Optimizing Quality of Experience of Dynamic Video Streaming Over Fading Wireless Networks" Submitted to 54th IEEE Conference on Decision and Control, pp. 7195-7200. Osaka, Japan, December 15-18, 2015. This material is based upon work partially supported by AFOSR Contract FA9550-13-1-0008, and NSF under Contract Nos. CNS-1302182 and Science & Technology Center Grant CCF-0939370.
- E. Kantor, Z. Lotker, M. Parter and D. Peleg. "Nonuniform SINR+Voronoi Diagrams are Effectively Uniform" Distributed Computing: 29th International Symposium (DISC), pages 588-601, October 2015.
- R. Singh and P. R. Kumar. "Decentralized Throughput Maximizing Policies for Deadline-Constrained Wireless Networks" Submitted to 54th IEEE Conference on Decision and Control, pp. 3759-3766. Osaka, Japan, December 15--18, 2015. Submitted March 24 2015. This material is based upon work partially supported by AFOSR Contract FA9550-13-1-0008, and NSF under Contract Nos. CNS-1302182 and Science & Technology Center Grant CCF-0939370.
- V.R. Cadambe, Z. Wang, and N. Lynch. "Information-Theoretic Lower Bounds on the Storage Cost of Shared Memory Emulation" Proceedings of the ACM Symposium on Principles of Distributed Computing (PODC), pp. 305-313.
- I. Shomorony, T. Courtade, and D. Tse. "Do Read Errors Matter for Genome Assembly?" IEEE International Symposium on Information Theory (ISIT). Hong Kong, July 2015.
- S. Holzer and N. Pinsker. "Computing Distances and Shortest Paths in the Congested Clique" 19th International Conference on Principles of Distributed Systems (OPODIS), December 2015.
- F. T. DeVilbiss, M. R. Maurya, S. Gupta, A. Mandli, S. Subramaniam and D. Ramkrishna. "Prediction of Gene Expression Using Goal-Directed Metabolic Models" AIChE Annual Meeting.
- E. Kantor, Z. Lotker, M. Parter and D. Peleg. "The Minimum Principle of SINR: A Useful Discretization Tool for Wireless Communication" 56th Annual IEEE Symposium on Foundations of Computer Science (FOCS), pages 330-349, October 2015.
- R. Singh, P.R. Kumar and L. Xie. "The ISO Problem: Decentralized Stochastic Control Via Bidding Schemes" Proceedings of the 53rd Annual Allerton Conference on Communication, Control, and Computing, pp.552-559. University of Illinois, September 30-October 2, 2015. Submitted July 6, 2015. This material is based upon work partially supported by NSF under Contract Nos. ECCS-1546682, CPS-1239116, and Science & Technology Center Grant CCF-0939370.
- K. Censor-Hillel, E. Kantor, N. Lynch and M. Parter. "Computing in Additive Networks with Bounded-Information Codes" Distributed Computing: 29th International Symposium (DISC 2015), pages 405-519.
- M. Ghaffari. "Near-Optimal Scheduling of Distributed Algorithms" ACM Symposium on Principles of Distributed Computing (PODC), pp. 3-12.
- A. Halder, X. Geng, G. Sharma, L. Xie and P. R. Kumar. "A Control System Framework for Privacy Preserving Demand Response of Thermal Inertial Loads" Submitted to Proceedings of IEEE International Conference on Smart Grid Communications IEEE SmartGridComm, pp.~181-186. Miami, November 2-5, 2015. Submitted May 28, 2015. This material is based upon work partially supported by NSF under Contract Nos. CPS-1239116, Science & Technology Center Grant CCF-0939370, DGE-1303378, and ECCS-1150944.
- N. Ahmed, J. Neville, R. Rossi, N. Duffield. "Efficient Graphlet Counting for Large Networks" Proceedings of the 15th IEEE International Conference on Data Mining (ICDM).
- S. Kim, N. Ampornpunt, A. Grama, and S. Chaterji. "Interpretable Deep Neural Networks for Enhancer Prediction" IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM), 2015.
- N. Lynch and C. Newport. "A (Truly) Local Broadcast Layer for Unreliable Radio Networks" ACM Symposium on Principles of Distributed Computing (PODC), pages 109-118, July 2015.
- N. Farsad, and A. Goldsmith. "Molecular Communication Using Acids and Bases" MBMC Workshop on Communications, Inference, And Computing In Molecular And Biological Systems, 2015.
- S. Yau, L. Ge, P. Hsieh, I. Hou, S. Cui, P. R. Kumar, A. Ekbal, N. Kundargi. "WiMAC: Rapid Implementation Platform for User Definable MAC Protocols Through Separation" Submitted to SIGCOMM 2015 Demos. London, United Kingdom, August 17-21, 2015. Submitted March 24 2015. This material is based upon work partially supported by AFOSR Contract FA9550-13-1-0008, NSF under Contract Nos. CNS-1302182,Science Technology Center Grant CCF-0939370, CNS-1343155,ECCS-1305979, CNS-1265227, DoD with grant HDTRA1-13-1-0029, and by grant NSFC-61328102.
- M. Ghaffari and R. Udwani. "Brief Announcement: Distributed Single-Source Reachability" ACM Symposium on Principles of Distributed Computing (PODC), pages 163-165, July 2015.
- N. Lynch, T. Radeva, and H. Su. "Brief Announcement: A Distributed Task Allocation in Ant Colonies" 29th International Symposium on Distributed Computing (DISC), October 2015.
- S. Gupta, Y. Kihara, M. R. Maurya, P. C. Norris, E. A. Dennis and S. Subramaniam. "A systems Biology Approach to Metabolic Antagonism Between Omega-3 and Omega-6 Fatty Acids During Macrophage Inflammatory Response" Biomedical Engineering Society Annual Meeting.
- Y. Altug, H. V. Poor and and S. Verdu. "Variable-length channel codes with probabilistic delay guarantees" Allerton conference on Communication, Control, and Computing at the University of Illinois.
- M. Razaviyayn, F. Farnia and D. Tse. "Discrete Renyi Classifier" Advances in Neural Information Processing Systems, pp. 3258-3266, 2015.
- M. Chowdhury, A. Manolakos and A. Goldsmith. "Multiplexing-diversity tradeoffs in noncoherent massive MIMO systems" Proceedings of Asilomar Conference on Signals, Systems and Computers.
- A. Ghoshal, A. Grama, S. Bagchi and S. Chaterji. "An Ensemble SVM Model for the Accurate Prediction of Non-Canonical MicroRNA Targets" ACM Bioinformatics and Computational Biology (ACM-BCB). Atlanta, 2015.
- A. Magner. W. Szpankowski, and D. Kihara. "Analysis of a Sequence to Structure Channel" ITA. San Diego, 2015.
- H. Mahmoud and M.D. Ward. "Asymptotic Properties of Protected Nodes in Random Recursive Trees" Journal of Applied Probability.
- D. Ramkrishna and M.R. Singh. "Population Balance Modeling. Current Status and Future Prospects" Annual Reviews in Chemical andBiomolecular Engineering.
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- N. Rapolu, S. Chakradhar and A. Grama. "A. M-Lock: Accelerating Distributed Transactions on Key-Value Stores Through Dynamic Lock Localization" Paper presented at the IEEE CLOUD, Santa Clara, California, July 2013.
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- A. Sarkar, D.E. Nikonov, I.A. Young, B. Behin-Aein and S. Datta. "Charge-Resistance Approach to Benchmarking Performance of Beyond-CMOS Information Processing Devices" arXiv preprint arXiv:1308.4748 .
- F. Farnoud , E. Yaakobi, B. Touri and O. Milenkovic. "Building Consensus via Iterative Voting" Proceedings of the ISIT 2013, Istanbul, Turkey.
- I. Ochoa, H. Asnani, D. Bharadia, M. Chowdhury, T. Weissman and G. Yona. "QualComp: a new lossy compressor for quality scores based on rate distortion theory" BMC Bioinformatics 14, no. 1 (2013): 187.
- A. Emad, M. Deng and O. Milenkovic. "CaSPIAN: A Causal Compressive Sensing Algorithm for Discovering Directed Interactions in Gene Networks" submitted to Bioinformatics, pp. 1-7, May 2013.
- J. Ligo, M. Kim, A. Emad, O. Milenkovic and V. Veeravali. "MCUIUC - A New Framework for Metagenomic Read Compression" Proceedings of the ITW, ITW'13, Seville, Spain, September 2013.
- K. Al Nasr, C. Liu, M. Rwebangira, L. Burge and J. He. "Intensity-Based Skeletonization of CryoEM Grayscale Images Using a True Segmentation-Free Algorithm" IEEE/ACM Transactions on Computational Biology and Bioinformatics.
- V. Kostina and S. Verdú. "Nonasymptotic noisy lossy source coding" IEEE Int. Workshop on Information Theory.
- Z. Zhang, S. Shang, S.R. Kulkarni and P. hui. "Improving Augmented Reality Using Recommender Systems" RecSys.
- F. Farnoud, V. Skachek and O. Milenkovic. "Error-Correction in Flash Memories via Codes in the Ulam Metric" IEEE Transactions on Information Theory, 59(5): 3003-3020, 2013.
- G. Kollias, E. Gallopoulos and A. Grama. "Surfing the Network for Ranking by Multidamping" IEEE Transactions on Knowledge and Data Engineering, 2013, accepted.
- T. Weissman, Y. Kim and H.H. Permuter. "Directed Information, Causal Estimation, and Communication in Continuous Time" Information Theory, IEEE Transactions on, vol.59, no.3, pp.1271,1287.
- P. Jacquet, D. Milioris and W. Szpankowski. "Classification of Markov Sources Through Joint String Complexity: Theory and Experiments" Paper presented at the ISIT 2013, Istanbul, Turkey.
- D. Dolev, J. Korhonen, C. Lenzen, J. Rybicki and J. Suomela. "Synchronous Counting and Computational Algorithm Design" SSS.
- A. Mazumdar, Y. Polyanskiy and B. Saha. "On Chebyshev radius of a set in Hamming space and the closest string problem" ISIT.
- M. Ozay, F.T. Yarman-Vural, S.R. Kulkarni and H.V. Poor. "Fusion of Image Segmentation Algorithms using Consensus Clustering" ICIP.
- H. Asnani, H.H. Permuter and T. Weissman. "Successive refinement with decoder cooperation and its channel coding duals" IEEE Transactions on Information Theory, vol. 59, no. 9, pp.5511-5533, September 2013.
- S. Zhe, A.Z. Naqvi, Y. Yang and Y. Qi. "Joint network and node selection for pathway- based genomic data analysis" Bioinformatics .
- J. Gaither and M.D. Ward. "The Variance of the Number of 2-Protected Nodes in a Trie" Paper presented at the Workshop on Analytic Algorithmics and Combinatorics , New Orleans, Louisiana, USA.
- N. Soltani and A. Goldsmith. "Inferring neural connectivity via measured delay in directed information estimates" ISIT.
- Y. Chen, Y.C. Eldar and A.J. Goldsmith. "Shannon meets Nyquist: capacity of sampled Gaussian channels" IEEE Transactions on Information Theory, vol. 59, no 8, pp. 4889 - 4914, August 2013.
- Y. Polyanskiy and S. Verdu. "Finite blocklength methods in information theory" Tutorial presented at 2013 IEEE Int. Symposium on Information Theory, Istanbul, Turkey, July 2013.
- Z. Zhang and S.R. Kulkarni. "Graph-Based Detection Of Shilling Attacks In Recommender Systems" MLSP.
- A. Emad and O. Milenkovic. "Compression of Noisy Signals via Information Bottlenecks" Proceedings of the IEEE Information Theory Workshop, Seville, Spain.
- L. Truong and W. Szpankowski. "Capacity of a Structural Binary Symmetric Channel" ISIT 2013, Istanbul, Turkey, July 2013.
- V. Misra and T. Weissman. "Unsupervised Learning and Universal Communication" ISIT.
- S.A. Motahari, K. Ramchandran, D. Tse and N. Ma. "Optimal Shotgun Sequencing: Noisy reads and as good as noiseless reads" Paper presented at the IEEE International Symposium on Information Theory, Istanbul, Turkey, July 2013.
- M. Ozay, I. Esnaola, F.T. Yarman-Vural, S.R. Kulkarni and H.V. Poor. "Sparse Attack Construction and State Estimation in the Smart Grid: Centralized and Distributed Models" Selected Areas in Communications, IEEE Journal on 31, no. 7 (2013): 1306-1318.
- F. Farhangmehr, M. Maurya , D. Tartakovsky and S. Subramaniam. "Information Theoretic Approach to Complex Biological Network Reconstruction: Application to Cytokine Release in RAW 264.7 Macrophages" Manuscript to be submitted.
- H. Asnani, H. Permuter and T. Weissman. "Capacity of a POST Channel with and without Feedback" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey.
- A. Kipnis, A. Goldsmith, T. Weissman and Y. Eldar. "Distortion Rate Function of Sub-Nyquist Sampled Gaussian Sources Corrupted by Noise" Proc. 51st Annu. Allerton Conf. Communication, Control, and Computing, Monticello, Illnois, USA.
- N. Soltani and A. Goldsmith. "Inferring Neural Connectivity via the Measured Delay in Directed Information Estimates" Paper presented at the IEEE International Symposium on Information Theory (ISIT 2013), Istanbul, Turkey, July 2013.
- H. Asnani, H. Permuter and T. Weissman. "Successive Renement with Decoder Cooperation and its Channel Coding Duals" IEEE Trans. Inform. Theory.
- A.S. Motahari, G. Bresler and D. Tse. "Information Theory of DNA Shotgun Sequencing" IEEE Transactions on Information Theory.
- G. Kollias, M. Sathe, S. Mohammadi and A. Grama. "A Fast Approach for the Global Alignment of Protein-Protein Interaction Networks" BMC research notes 6, no. 1 (2013): 35.
- C.J. Quinn, N. Kiyavash and T.P. Coleman. "Efficient Methods to Compute Optimal Tree Approximations of Directed Information Graphs" Signal Processing, IEEE Transactions on , vol.61, no.12, pp.3173,3182, June15, 2013.
- S. Mohammadi, B. Saberidokht and A. Grama. "Comparative analysis of human tissue- specific networks with the yeast interactome" Molecular Systems Biology, 2013, submitted.
- S. Rini and A. Goldsmith. "A General Approach to Random Coding for Multi-Terminal Networks" Paper presented at the Proc. 2013 IEEE Information Theory and its Application, San Diego, USA, February 2013.
- E. Haramaty, A. Shpilka and M. Sudan. "Optimal testing of multivariate polynomials over small prime fields" SIAM Journal on Computing 42, no. 2 (2013): 536-562.
- L. Su, F. Farnoud and O. Milenkovic. "Computing Similarity Distances Between Rankings" arXiv preprint arXiv:1307.4339 .
- D.M. Savel, T. LaFramboise, A. Grama and M. Koyuturk. "Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error" Paper presented at the ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, September 2013.
- R. Singh, I. Hou and P.R. Kumar. "Pathwise Performance of Debt Based Policies for Wireless Networks with Hard Delay Constraints" IEEE Conference on Decision and Control.
- D. Pavlichin, T. Weissman and G. Yona. "The human genome contracts again" Bioinformatics 29, no. 17 (2013): 2199-2202..
- C. Uhler, G. Raskutti, P. Buhlmann and B. Yu. "Geometry of the faithfulness assumption in causal inference" The Annals of Statistics 41, no. 2 (2013): 436-463.
- F. Farnoud and O. Milenkovic. "Multipermutation Codes in the Ulam Metric for Nonvolatile Memories" submitted.
- K. Kittichokechai, Y.K. Chia, T.J. Oechtering, M. Skoglund and T. Weissman. "Secure Source Coding with a Public Helper" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey.
- R. Xiang and J. Neville. "Collective Inference for Network Data with Copula Latent Markov Networks" Proceedings of the 6th ACM International Conference on Web Search and Data Mining, Rome, Italy, February 2013.
- T. Courtade . "Outer bounds for multiterminal source coding via a strong data processing inequality" ISIT.
- H. Kowshik and P.R. Kumar. "Optimal Computation of Symmetric Boolean Functions in Collocated Networks" Selected Areas in Communications, IEEE Journal on 31, no. 4 (2013): 639-654.
- S.E. Palmer, O. Marre, M. Berry II and W. Bialek. "Predictive information in a sensory population" arXiv preprint arXiv:1307.0225 .
- L. Cen, E. Dragut, L. Si and M. Ouzzani. "Author Disambiguation by Hierarchical Agglomerative Clustering with Adaptive Stopping Criterion Authors" Paper presented at the International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR). Dublin, Ireland.
- S. Rini and A. Goldsmith. "On the capacity of the MIMO cognitive interference channel" Paper presented at the IEEE International Symposium on Information Theory (ISIT 2013), Istanbul, Turkey, July 2013.
- Y. Afek. "27th International Symposium on DIStributed Computing " DISC.
- M.A. Forbes and A. Shpilka. "Quasipolynomial-time Identity Testing of Non-Commutative and Read- Once Oblivious Algebraic Branching Programs" FOCS.
- A. No, A. Ingber and T. Weissman. "Complexity and Rate-Distortion Tradeo via Successive Renement" Allerton Conf.Communication Control and Computing.
- M. Atallah, E. Grigorescu and Y. Wu. "A lower-variance randomized algorithm for approximate string matching"
*Information Processing Letters*(2013). - M.R. Maurya, S. Gupta, X. Li, E. Fahy, A.R. Dinasarapu, M. Sud and H.A. Brown . "Analysis of Inflammatory and Lipid Metabolic Networks across RAW264. 7 and Thioglycolate-elicited Macrophages" Journal of Lipid Research (2013).
- M. Tikhonov and W. Bialek. "Complexity in genetic networks: topology vs. strength of interactions" arXiv preprint arXiv:1308.0317 .
- A. No and T.P. Weissman. "Minimax Filtering Regret via Relations Between Information and Estimation" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey, July 2013.
- Q. Wang, L. Ruan, Z. Zhang and L. Si. "Learning Compact Hashing Codes for Efficient Tag Completion and Prediction" Paper presented at the ACM Conference of Information and Knowledge Management (CIKM), San Francisco, California, USA, September 2013.
- Y. Qi and Y. Guo. "Message passing with l1 penalized KL minimization" Proceedings of International Conference on Machine Learning, Atlanta, Georgia, USA, June 2013.
- S. Daum, M. Ghaffari, S. Gilbert, F. Kuhn and C. Newport. "Maximal Independent Sets in Multichannel Radio Networks" PODC.
- Y. Polyanskiy. "Hypercontractivity of spherical averages in Hamming space" arXiv preprint arXiv:1309.3014 .
- T. Javidi and A. Goldsmith. "Joint source channel coding with feedback" Paper presented at the IEEE International Symposium on Information Theory, Istanbul, Turkey.
- S. Rini , E. Kurniawan, L. Ghaghanidze and A. Goldsmith. "Rate Optimization for Relay- Assisted Downlink Cellular Systems Using Superposition Coding" Paper presented at the Proc. 2013 IEEE International Communication Conference, Budapest, Hungary, June 2013.
- I. Ochoa, A. Ingber and T. Weissman. "Ecient Similarity Queries via Lossy Compression" Allerton Conf. Communication Control and Computing.
- S. Mohammadi, S. Subramaniam and A. Grama. "Inferring the Effective TOR-Dependent Network: A Computational Study in Yeast" BMC Systems Biology 7 (2013): 84.
- G. Tkacik, O. Marre, D. Amodei, E. Schneidman and W. Bialek. "Searching for collective behavior in a network of real neurons" arXiv preprint arXiv:1306.3061 .
- I. Ochoa, A. Ingber and T.P. Weissman. "Efficient Similarity Queries via Lossy Compression" Proc. 51st Annu. Allerton Conf. Communication, Control, and Computing, Monticello, Illinois, USA, October 2013.
- Q. Wang, D. Zhang and L. Si. "Semantic Hashing Using Tags and Topic Modeling" Paper presented at the International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR), Dublin, Ireland, July 2013.
- M. Chowdhury, A. Goldsmith and T. Weissman. "Reliable Uncoded Communication in the Underdetermined SIMO MAC with Low-Complexity Decoding" Proceedings of Allerton.
- A. Kipnis, A.J. Goldsmith, T. Weissman and Y.C. Eldar. "Distortion Rate Function of Sub-Nyquist" Allerton Conference on Communication Control and Computing.
- H. Asnani, I. Shomorony, S. Avestimehr and T. Weissman. "Network Compression: Worst- Case Analysis" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey.
- A. Magner, C. Knessl and W. Szpankowski. "Expected External Profile of PATRICIA Tries" ANALCO, Portland, OR, January 2013.
- S. Rini and C. Huppert. "On the capacity of the cognitive interference channel with a common cognitive message" Transactions on Emerging Telecommunications Technologies.
- J. Jiao, K. Venkat and T. Weissman. "Pointwise relations Between Information and Estimation in the Poisson Channel" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey.
- V. Misra and T. Weissman. "Pattern Decoding for an Unknown Codebook of Unknown Rate Across an Unknown Channel" Paper presented at the Int. Symp. Information Theory, Istanbul, Turkey, July 2013.
- S. Hyun-Soeb, D. Ramkrishna, G. Pinchuck, A. Beliaev, A. Konopka and J. Fredrickson. "Dynamic Modeling of Aerobic Growth of Shewanella oneidensis. Predicting Energy Requirement for Growth Triauxic Growth and Flux Distributions." Metabolic Engineering.
- I. Greenberg, D. Xu and D. Kumar. "Processing: Creative Coding and Generative Art in Processing Two" Apress.
- W. Bialek, A. Cavagna, I. Giardina, T. Mora, O. Pohl, E. Silvestri, M. Viale and A. Walczak. "Social interactions dominate speed control in driving natural flocks toward criticality" arXiv preprint arXiv:1307.5563 .
- M. Ghaffari and B. Haeupler. "Near Optimal Leader Election in Multi-Hop Radio Networks" Proceedings of the ACM-SIAM Symposium on Discrete Algorithms (SODA'13), New Orleans, Louisiana.
- Q. Wang, D. Zhang and L. Si. "Weighted Hashing for Fast Large Scale Similarity Search" Paper presented at the ACM Conference of Information and Knowledge Management (CIKM), San Francisco, California, USA, September 2013.
- G.T. Costakes, A. Sen, R.C. Aguilar and V. Stauffacher. "Crystallographic analysis of the ENTH domain from yeast epsin Ent2 that induces a cell division phenotype" Protein Science (2013).
- K. Kambatla, G. Kollias and A. Grama. "Topological Similarity Computations in MapReduce" Parallel Computing Submitted.
- H. Asnani, I. Shomorony, S. Avestimehr and T. Weissman. "Operational Extremality of Gaussianity in Network Compression, Communication, and Coding" Proc. 2013 IEEE Inf. Th. workshop (ITW2013), Seville, Spain.
- I. Kontoyiannis and S. Verdu. "Optimal lossless compression: Source varentropy and dispersion" Paper presented at the Proc. 2013 IEEE Int. Symposium on Information Theory, Istanbul, Turkey.
- C. Quinn, J. Etesami, N. Kiyavash and T.P. Coleman. "Robust Directed Tree Approximations for Networks of Stochastic Processes" Paper presented at the IEEE International Symposium on Information Theory, Istanbul, Turkey July 2013.
- F. DeVilbiss, H.S. Song and D. Ramkrishna. "Developing and Information-Theoretic Framework for Model Selection in Systems Biology" AIChE Annual Meeting.
- C. Lenzen and D. Peleg. "Efficient Distributed Source Detection with Limited Bandwidth" PODC.
- Y. Polyanskiy and Y. Wu. "Peak-to-average power ratio of good codes for Gaussian channel" arXiv preprint arXiv:1302.0084 .
- F. Farnoud and O. Milenkovic. "Aggregating Rankings with Positional Constraints" Proceedings of the Information Theory Workshop (ITW), Seville, Spain.
- H.S. Song, F. DeVilbiss and D. Ramkrishna. "Modeling Metabolic Systems. The Need for Dynamics" Current Opinion in Chemical Engineering.
- V. Anantharam, A. Gohari, S. Kamath and C. Nair. "On Hypercontractivity and the Mutual Information Between Boolean Functions" Proceedings of the 51st Annual Allerton Conference on Communications Control and Computing.
- D. Mukherjee, A. Sen, D.R. Boettner, G.D. Fairn, D. Schlam, F.J.B. Valentin and J.M. McCaffery . "Bem3, a Cdc42 GTPase-Activating Protein, traffics to an intracellular compartment and recruits the secretory Rab GTPase Sec4 to endomembranes" Journal of Cell Science (2013).
- G. Bresler, M. Bresler and D. Tse. "Optimal Assembly for High Throughput Shotgun Sequencing" arXiv preprint arXiv:1301.0068 .
- E.H. Almeshekah, M.J. Atallah and E.H. Spafford. "Covert Channels Can Be Useful! -- Layering Authentication Channels to Provide Covert Communication" Paper presented at the Proc. 21st International Workshop in Security Protocols (SPW 2013), Cambridge, United Kingdom.
- M. Chowdhury, A. Goldsmith and T. Weissman. "Reliable Uncoded Communication in the SIMO MAC via Low-Complexity Decoding" Paper presented at the IEEE International Symposium on Information Theory (ISIT 2013), Istanbul, Turkey.
- M. Ghaffari , B. Haeupler and M. Khabbazian. "Randomized Broadcast in Radio Networks with Collision Detection" Proceedings of the 32nd Annual ACM Symposium on Principles of Distributed Computing (PODC'13), Montreal, Canada.
- S. Kannan, L. Pachter and D. Tse. "De Novo RNA Shotgun Sequencing: Fundamental Limits" Paper presented at the Allerton Conference, Urbana, Illinois.
- M.J. Atallah, K. Frikken and S. Wang. "Private Outsourcing of Matrix Multiplication over Closed Semi-Rings" Accepted for publication in Proceedings International Conference on Security and Cryptography (SECRYPT 2012), Rome, Italy.
- M. Drmota , W. Szpankowski and K. Viswanathan. "Mutual Information for a Deletion Channel" Paper presented at the ISIT 2012, MIT .
- D. Hong and L. Si. "Mixture Model with Multiple Centralized Retrieval Algorithms for Result Merging in Federated Search" To appear in International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) (Acceptance Rate: 20%).
- C. Task and C. Clifton. "A Guide to Differential Privacy Theory in Social Network Analysis" Paper presented at theIEEE/ACM International Conference on Social Networks Analysis and Mining (ASONAM 2012), Istanbul, Turkey, August 2012.
- Z. Xu, F. Yan and Y. Qi. "Infinite Tucker Decomposition: Nonparametric Bayesian Models for Multiway Data Analysis" Paper presented at the International Conference on Machine Learning, Edinburgh, Scotland, June 2012.
- Y. Choi and W. Szpankowski. "Compression of Graphical Structures: Fundamental Limits Algorithms and Experiment" IEEE Trans. Information Theory.
- V. Anantharam and V. Borkar. "Stochastic Approximation with Long Range Dependent and Heavy Tailed Noise" Queueing Systems: Theory and Applications, 2012.
- O. Goldreich, B. Juba and S. Sudan. "A Theory of Goal-Oriented Communication" Journal of the ACM. 59(2), Article 8. 2012.
- H. Li and C. Liu. "Peptide sequence tag generation for tandem mass spectra containing post-translational modifications" International Journal of Computational Biology and Drug Design 5, no. 3 (2012): 325-334.
- Y. Chen, Y.C. Eldar and A.J. Goldsmith. "Channel Capacity under General Nonuniform Sampling" Paper presented at the IEEE International Symposium on Information Theory (ISIT), Cambridge, MA.
- F. Farnoud , B. Touri and O. Milenkovic. "Nonuniform Vote Aggregation Algorithms" to be presented at SPCOM .
- A. Kundu, M.J. Atallah and E. Bertino. "Leakage-free redactable signatures" Proceedings ACM Conference on Data and Application Security and Privacy, San Antonio, Texas.
- P. Ritchey and V. Rego. "Hiding Secret Messages in Huffman Trees" Proceedings of the International Conference on Intelligent Information Hiding and Multimedia Signal Processing (IIH-MSP), Piraeus-Athens, Greece, July 2012.
- Y. Benjamini and B. Yu. "Shuffle estimator for signal strength in event related fMRI experiments"
*Annals of Applied Statistics*, April 2012. - A. Jain, D. Gunduz, H.V. Poor and S. Verdu. "Energy- Distortion Tradeoffs in Gaussian Joint Source-Channel Coding Problems" IEEE Trans. on Information Theory, Vol.58, No. 5, pp. 3153-3168, May 2012.
- H.S. Song , D. Ramkrishna, G. Pinchuk, A.S. Beliaev, A.E. Konopka and J.K. Fredrickson. "Dynamic Modeling of Aerobic Growth of Shewanella oneidensis. Predicting Energy Requirement for Growth, Triauxic Growth, and Flux Distributions" Metabolic Engineering.
- B. Oguz , V. Anantharam and I. Norros. "Stable, distributed P2P protocols based on random peer sampling" Paper presented at the 50th Annual Allerton Conference on Communications, Control, and Computing, Urbana, Illinois, October 2012.
- T. Wang, P. Hui, S.R. Kulkarni and P.W. Cuff. "Cooperative Caching based on File Popularity Ranking in Delay Tolerant Networks" Paper presented at the ExtremeCom '12, Zurich, Switzerland, March 2012.
- Z. Zhang, P. Cuff and S. Kulkarni. "Iterative Collaborative Filtering for Recommender Systems with Sparse Data" IEEE International Workshop on Machine Learning for Signal Processing, Santander, Spain, Sept. 2012.
- A. Drucker, F. Kuhn and R. Oshman. "The communication complexity of distributed task allocation" In Proceedings of the 31st Annual ACM Symposium on Distributed Computing, Madeira, Portugal.
- J. Marial. "Backpropagation rules for sparse coding" Sparsity workshop, ICML 2012. Edinburgh, Scotland, June - July 2012.
- C. Task. "A Practical Beginner's Guide to Differential Privacy" CERIAS Security Seminar, Purdue University, April 2012, and Sandia Labs, Albuquerque, NM, June 2012.
- S. Datta. "Lessons from Nanoelectronics" to be published, World Scientific (2012).
- G. Louchard, H.S. Prodinger and M.D. Ward. "Number of Survivors in the Presence of a Demon" Periodica Mathematica Hungarica, Vol. 64, pp. 101-117, 2012.
- S. Sastry, T. Radeva, J. Chen and J. Welch. "Reliable networks with unreliable sensors" Pervasive and Mobile Computing.
- J. Yu, S.R. Kulkarni and H.V. Poor. "Robust ellipse and spheroid fitting" Pattern Recognition Letters 33, no. 5 (2012): 492-499.
- F. Farnoud , B. Touri and O. Milenkovic. "Novel Distance Measures for Rank Aggregation" arXiv preprint arXiv:1212.1471 .
- B. Juba. "Efficient Reasoning in PAC-Semantics" Paper presented at the UW CSE Theory Seminar, University of Washington, Seattle, WA.
- E. Kurniawan, S. Rini and A. Goldsmith. "Energy Efficient Cooperation for Two-Hop Relay Networks" Paper presented at the Proc. 2012 APSIPA Annual Summit and Conference, Hollywood, CA.
- S. Mohammadi , G. Kollias and A. Grama. "Role of Synthetic Genetic Interactions in Understanding Functional Interactions Among Pathways" Paper presented at the Pacific Symposium on Biocomputing (PSB), HI, January 2012.
- R.L. Rivest and E. Shen. "A Bayesian Method for Auditing Elections" Proceedings EVT/WOTE Conference (2012), Bellevue, Washington, USA, August 2012.
- S. Verdu. "Non-asymptotic achievability bounds in multiuser information theory" Paper presented at the Fiftieth Annual Allerton conference on Communication, Control, and Computing, University of Illinois, Monticello, Illinois, October 2012.
- J. Cichon, J. Lemiesz, M. Zawada and W. Szpankowski. "Two-Phase Cardinality Estimation Protocols for Sensor Networks with Provable Precision" Paper presented at the 2012 IEEE Wireless Communications and Networking Conference (WCNC 2012), Paris.
- H. Li, J. Tounkara and C. Liu. "Prediction of Protein-Protein Docking Sites Based on a Cloud- Computing Pipeline" Paper presented at the 1st International Conference on Information and Intelligent Computing (ICIIC 2012), Chengdu, China, December 2012.
- M.D. Oliver, S. Nishimoto, T.N. Naselaris and J.L. Gallant. "Mapping Foveal V1 Spatial- Temporal-Chromatic Receptive Fields in the Awake Macaque Using Natural Movies" Paper presented by Society for Neuroscience Meeting, New Orleans, LA, October 2012.
- T. Weissman. "New Estimators of Directed Information" Proc. 7th Annu. Workshop on Information Theory and its Applications (ITA09), UCSD, San Diego, California, February 2012 (invited).
- Z. Zhang, X. Gu and S.Y. Kung. "Color-frequency-orientation Histogram Multiclass Image Retrieval" IEEE International Conference on Acoustics, Speech and Signal Processing, Kyoto, Japan, March 2012.
- J. Kim, H.S. Song, S.R. Sunkara and D. Ramkrishna. "Exacting Predictions by Cybernetic Model Confirmed Experimentally, Steady State Multiplicity in the Chemostat" Biotechnology progress 28, no. 5 (2012): 1160-1166.
- T.A. Wang, V.Y. Yanxun, G. Govindaiah, X. Ye, L. Artinian, T.P. Coleman, J.V. Sweedler, C.L. Cox and M.U. Gillette. "Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons" Science 337, no. 6096 (2012): 839-842.
- M. Bentounsi, S. Benbernou, M. Atallah and C. Deme. "Anonyfrag: An Anonymization-Based Approach For Privacy-Preserving BPaaS" Paper presented at the Proc. 1st International Workshop on Cloud Intelligence (Cloud-I, a VLDB 2012 Workshop), Istanbul, Turkey.
- A. Drucker. "High-Confidence Predictions under Adversarial Uncertainty" Paper presented at the ITCS 2012, Jan. 2012, Cambridge, MA.
- V. Kostina and S. Verdu. "Lossy joint source-channel coding in the finite blocklength regime" Paper presented at the Proc. 2012 IEEE Int. Symposium on Information Theory, MIT, Cambridge, Massachusetts, USA.
- D. Ramkrishna. "Dynamic Modeling of Metabolism. The Cybernetic Approach" Paper presented at the AIChE Annual Meeting, Pittsburgh, Pennsylvania, October - November 2012.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "A Comprehensive Comparison of Statistical and Optimization-based Methods for Reconstruction of Biological Networks" IET Systems Biology, 2012.
- S. Sastry and J. Widder. "A New Proof Technique for the Solvability-Based Comparison of Failure Detectors" OPODIS.
- A. Zhang, L. Si and V.J. Rego. "Sentiment Detection with Auxiliary Data" Journal of Information Retrieval (JIR).
- F. Farnoud , P. Santhanam and O. Milenkovic. "Alternating Markov Chains for Distribution Estimation in the Presence of Errors" To be presented at ISIT .
- J. Jung, Y.H. Kim, F. Matejka and C.A. Sims. "Discrete behavior in information-constrained tracking problems and portfolio choice" Paper presented at the Center for Economic Research and Graduate Education and the Economics Institute (CERGE-EI), Prague .
- N. Santhanam and V. Anantharam. "Agnostic insurance tasks and their relation to compression" Paper presented at the International Conference on Signal Processing and Communications, Bangalore, India, July 2012.
- S. Verdu. "Finite blocklength fundamental limits in information theory" Paper presented as an Invited Plenary Talk, The Ninth International Symposium on Wireless Communication Systems, Paris, France, August 2012.
- A. Sarkar, S. Srinivasan, B. Behinaein and S. Datta. "All spin logic device as a compact neuron" Dev. Res. Conf (2012).
- S. Cetintas and L. Si. "Effective Query Generative and Postprocessing Strategies for Prior Art Patent Search" Journal of the American Society for Information Science and Technology (JASIST). 2012.
- S. Jalali, A. Montanari and T. Weissman. "Lossy Compression of Discrete Sources via the Viterbi Algorithm" IEEE Trans. Inform. Theory, Vol. 58, No. 4, pp. 2475-2489, April 2012.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Hybrid Penalization Approach for Reconstruction of Biological Networks" Paper presented at the AICHE 2012 General Meeting, Pittsburg, PA.
- A. Cornejo, S. Gilbert and C. Newport. "Aggregation in dynamic networks" To appear in Proceedings of the 31st Annual ACM Symposium on Distributed Computing, Madeira, Portugal.
- A. Gohari, C. Nair and V. Anantharam. "On Marton's inner bound for broadcast channels" To appear in IEEE International Symposium on Information Theory, Cambridge, Massachusetts.
- H. Li, J. Tounkara, L. Burge and C. Liu. "A Rapid 3D protein Structural Classification using Pseudo 2D HMMs" Paper presented at the 2012 IEEE International Conference on Granular Computing (GrC 2012), Hangzhou, China, August 2012.
- M. Ozay, I. Esnaola, F.T. Yarman Vural, S.R. Kulkarni and H.V. Poor. "Distributed Sparse Attacks and State Vector Estimation in the Smart Grid" Paper presented at the IEEE SmartGridComm, Tainan City, Taiwan, November 2012.
- S. Shang, S.R. Kulkarni, P.W. Cuff and P. Hui. "A Random Walk Based Model Incorporating Social Information for Recommendations" Paper presented at the 2012 IEEE Machine Learning for Signal Processing Workshop (MLSP), Santander, Spain, September 2012.
- Y. Choi and W. Szpankowski. "Compression of Graphical Structures: Fundamental Limits, Algorithms, and Experiments" IEEE Transactions of Information Theory, 58, 2012.
- T. Wang, J. Sturm, P. Cuff and S.R. Kulkarni. "Condorcet Voting Methods Avoid the Paradoxes of Voting Theory" Annual Allerton Conference.
- M.D. Ward. "Asymptotic Analysis of the Norlund and Stirling Polynomials" Applicable Analysis and Discrete Mathematics, Vol. 6, pp. 95-105.
- A. Drucker. "Limitations of Lower-Bound Methods for the Wire Complexity of Boolean Operators" Paper presented at the CCC 2012 Porto, Portugal.
- A. Ingber and R. Zamir. "Expurgated infinite constellations at finite dimensions" Proceedings of Int. Symp. Information Theory.
- J. Marial. "Structured Sparse Estimation with Network Flow Optimization" Paper presented at the Neyman seminar. UC Berkeley, February 2012.
- A. Goldsmith. "Principles of Cognitive Radio" co-author, to appear in Fall 2012, Published by Cambridge University Press.
- S.K. Gorantla, S. Kadloor, T.P. Coleman, N. Kiyavash, I.S. Moskowitz and M.H. Kang. "Characterizing the Efficacy of the NRL Network Pump in Mitigating Covert Timing Channels" IEEE Transactions on Information Forensics and Security, February 2012.
- R. Ma, N. Aghasadeghi, J.A. Jarzebowski, T.W. Bretl and T.P. Coleman. "A Stochastic Control Approach to Optimally Designing Variable-Sized Menus in P300 Communication Prostheses" IEEE Transactions on Neural Systems and Rehabilitation Engineering (TNSRE), January 2012.
- S. Sastry, J. Welch and J. Widder. "Wait-Free Self-Stabilizing Daemons" OPODIS.
- B. Chern, A. Manolakos, A. No, I. Ochoa, K. Venkat and T. Weissman. "Reference Based Genome Compression" Paper presented at the Proc. 2012 IEEE Inf. Th. workshop (ITW2012), Lausanne, Switzerland.
- S. Kamath. "An information-theoretic meta-theorem for network coding and applications to Gaussian networks" Paper presented at the MURI meeting, Berkeley.
- N. Santhanam and V. Anantharam. "Prediction Over Countable Alphabets" To appear in Proceedings of the 46th Annual Conference on Information Sciences and Systems, Princeton University, Princeton, NJ, March, 2012.
- S. Verdu and I. Kontoyiannis. "Lossless Data Compression Rate: Asymptotics and Non- Asymptotics" Paper presented at the 46th Annual Conference on Information Sciences and Systems, Princeton, New Jersey, March 2012.
- S. Jalali and T. Weissman. "Denoising via MCMC-based Lossy Compression" IEEE Trans. Sig.Proc., Vol. 60, No. 6, pp. 3092-3100, June 2012.
- A. Cornejo, N. Lynch and S. Sastry. "Asynchronous Failure Detectors" Proceedings of the 31st Annual ACM Symposium on Distributed Computing, Madeira, Portugal.
- M. Ozay, I. Esnaola, F.T. Yarman Vural, S.R. Kulkarni and H.V. Poor. "Smarter Security in the Smart Grid" Paper presented at the IEEE SmartGridComm, Tainan City, Taiwan, November, 2012.
- I. Shomorony, S. Avestimehr, H. Asnani and T. Weissman. "Worst-Case Source for Distributed Compression with Quadratic Distortion" Proc. 2012 IEEE Inf. Th. workshop (ITW2012), Lausanne, Switzerland, September 2012 (invited).
- J. Mairal and B. Yu. "Supervised feature selection in graphs with path coding penalties" submitted to Journal of Machine Learning Research.
- M. Blanton, M.J. Atallah, K. Frikken and Q. Malluhi. "Secure and Efficient Outsourcing of Sequence Comparisons" Accepted for publication in Proceedings 17th European Symposium on Research in Computer Security (ESORICS 12), Pisa, Italy.
- H. Eldardiry and J. Neville. "An Analysis of How Ensembles of Collective Classifiers Improve Predictions in Graphs" Paper presented at the Proceedings of the 21st ACM International Conference on Information and Knowledge Management, Maui, Hawaii, USA .
- J. Marial and B. Yu. "Complexity analysis of the Lasso regularization path" In International Conference on Machine Learning (ICML), 2012.
- M. Ward and E. Gundlach. "A Student-Friendly Introduction to Probability" to be published with W. H. Freeman in (approximately) December 2012.
- D. Shutin, C. Zechner, S.R. Kulkarni and H.V. Poor. "Regularized Variational Bayesian Learning of Echo State Networks with Delay & Sum Readout" Neural Computation.
- A. Gupta, S. Verdu and T. Weissman. "Achievable Complexity-Performance Tradeoffs in Lossy Compression" Problems of Information Transmission 48, no. 4 (2012): 352-375.
- H.M. Mahmoud and M.D. Ward. "Asymptotic Distribution of Two-Protected Nodes in Random Binary Search Trees" Applied Mathematics Letters, volume 25 (2012), 2218-2222.
- V. Skachek, O. Milenkovic and A. Nedic. "Hybrid Noncoherent Network Coding" In Network Coding (NetCod), 2012 International Symposium on, pp. 7-12. IEEE.
- S. Kamath. "A Unified Approach to Max-Flow Min-Cut theorems on undirected graphs" Paper presented at the MURI meeting, Berkeley.
- H. Li and C. Liu. "Prediction of Protein Structures Using GPU Based Simulated Annealing" Paper presented at the 11th IEEE International Conference on Machine Learning and Applications (ICMLA 2012), Boca Raton, FL.
- S.A. Motahari, G. Bresler and D. Tse. "Information Theory of DNA Sequencing: A Basic Model" Paper presented at the IEEE International Symposium on Information Theory, Cambridge, MA, July 2012.
- N. Santhanam and V. Anantharam. "Universal algorithms in probabilistic setups: building a case for pointwise convergence over model classes" Paper presented at the 50th Annual Allerton Conference on Communications, Control, and Computing, Urbana, Illinois, October 2012.
- D. Wang, A. Ingber and Y. Kochman. "A strong converse for joint source-channel coding" Proceedings of Int. Symp. Information Theory, Cambridge, MA, July 2012.
- S. Jalali and T. Weissman. "Block and Sliding-Block Lossy Compression via MCMC" IEEE Trans. on communications, Vol. 60, No. 8, pp. 2187 - 2198, August 2012.
- A. Oguz and V. Anantharam. "Hurst index of functions of long range dependent Markov chains" Journal of Applied Probability, Vol 49, No 2, June 2012.
- A. Emad and O. Milenkovic. "Semi-Quantitative Group Testing: a General Paradigm with Applications in Genotyping" submitted, 2012 (preliminary papers ITW 2011, ISIT 2012). In revision.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Doubly Penalized LASSO for Reconstruction of Biological Networks" Paper presented at the UCSD Research Expo.
- A. Cornejo, N. Lynch , E. Fudge, S. Bilstein, M. Khabbazian and J. McLurkin. "Scale-free coordinates for multi-robot systems" Paper presented at the Workshop on the Algorithmic Foundations of Robotics (WAFR), Cambridge, MA.
- A. Apostol, G. Jiang, G. Huang, J. Wypych, X. Zhang, J. Gastwirt, K. Chen, S.L. Fodor, S. Hapurachichi, D. Meriage, F. Ye, D. Kelner, L. Poppe and Wojciech Szpankowski. "Uncertainty Estimates of Purity Measurements Based on Current Information: Toward a "Live Validation" of Purity Methods" Pharmaceutical Research.
- J.A. Fill, S. Janson and M.D. Ward. "Partitions with Distinct Multiplicities of Parts: On An Unsolved Problem" Posed By Herbert Wilf, Electronic Journal of Combinatorics, 19(2), article P18, 2012.
- J. Ponniah, Y.H. Hu and P.R. Kumar. "An Orthogonal Multiple Access Coding Scheme" Communications in Information and Systems: Special Issue in Honor of Professor Han-Fu Chen. pp. 41-76, vol. 12, no. 1, 2012.
- N. Merhav and W. Szpankowski. "Average redundancy of the Shannon code for Markov sources" arXiv preprint arXiv:1208.1225 .
- P. Jacquet and W. Szpankowski. "Joint String Complexity for Markov Sources, 23rd International Meeting on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms" AofA'12, DMTCS Proc., Montreal, Canada.
- V. Kostina and S. Verdu. "A New Converse in Rate-Distortion Theory" Paper presented at the 46th Annual Conference on Information Sciences and Systems, Princeton, New Jersey.
- S. Rini. "An Extension to the Chain Graph Representation of an Achievable Scheme" Paper presented at the Proc. 2012 IEEE Information Theory Workshop, Lausanne, Switzerland, September 2012.
- W. Szpankowski and M. Weinberger. "Minimax Pointwise Redundancy for Memoryless Model over Large Alphabets" IEEE Trans. Information Theory.
- J. Mairal, F. Bach and J. Ponce. "Task-driven dictionary learning" IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 34(4), pp.791-804, 2012.
- A. Sen, K. Madhivanan, D. Mukherjee and R.C. Aguilar. "The epsin protein family: coordinators of endocytosis and signaling" BioMolecular Concepts 3 (2): pp 117-126.
- V. Skachek and O. Milenkovic. "Rank modulation for translocation error correction" In Information Theory Proceedings (ISIT), 2012 IEEE International Symposium on, pp. 2988-2992. IEEE.
- Y.K. Chia, R. Soundararajan and T. Weissman. "Estimation with a Helper who Knows the Interference" Paper presented at the Int. Symp. Information Theory, Cambridge, MA.
- K. Ganesan, Y. Wen, P. Grover, A. Goldsmith and J. Rabaey. "Optimizing code-decoder pairs for "green" code-design" Paper presented at the IEEE Globecom, Anaheim, California, USA.
- S. Kamath and V. Anantharam. "Non-interactive simulation of joint distributions: the Hirschfeld-Gebelein-Renyi correlation and the hypercontractivity ribbon" Paper presented at the 50th Annual Allerton Conference on Communications, Control, and Computing, Urbana, Illinois.
- H. Li, C. Liu, L. Burge, K.D. Ko and W.M. Southerland. "Predicting Protein-Protein Interactions Using Full Bayesian Network" Paper presented at the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2012) Philadelphia, Pennsylvania.
- S. Sastry. "A New Modeling Framework for Asynchronous Failure Detectors" Paper presented at the Young Researchers Workshop on Concurrency Theory, Newcastle upon Tyne, UK, September 2012.
- A. Sen, D. Mukherjee, M. Ramos-Miller, C.B. Hannah and R.C. Aguilar. "Ubiquitination and the presence of a ST-motif is required for the endocytosis of the yeast ATPase ENa1" American Society of Cell Biology 52nd Annual Meeting. Los Angeles, 2012 (to be presented).
- Y.K. Chia, H.H. Permuter and T. Weissman. "Cascade, Triangular and Two Way Source Coding with Degraded Side Information at the Second User" IEEE Trans. Inform. Theory, Vol.58, No. 1, pp. 189-206, January 2012.
- F. Twofic, S. Gupta, V. Honavar and S. Subramaniam. "B-cell Ligand Processing Pathways Detected by Large-scale Comparative Analysis" Genomics, Proteomics & Bioinformatics, 10(3), 142-152.
- T. Courtade and T. Weissman. "Multiterminal Source Coding under Logarithmic Loss" Paper presented at the Int. Symp. Information Theory, Cambridge.
- I. Greenberg, Deepak Kumar and Dianna Xu. "Creative coding and visual portfolios for CS1" Proceedings of the 43rd ACM Technical Symposium on Computer Science Education (SIGCSE 2012), pp. 247-252. ACM, New York.
- Y. Wu and S. Verdu. "Optimal Phase Transitions in Compressed Sensing with Noisy Measurements" Paper presented at the Proc. 2012 IEEE Int. Symposium on Information Theory, MIT, Cambridge, Massachusetts, July 2012.
- J. Gaither, Y. Homma, M. Sellke and M.D. Ward. "On the Number of 2-Protected Nodes in Tries and Suffix Trees" Discrete Mathematics and Theoretical Computer Science, AQ (2012), 381-398, 2012.
- Y. Wu and S. Verdu. "Functional Properties of Minimum Mean-Square Error and Mutual Information" IEEE Trans. on Information Theory, Vol. 58, No. 3, pp. 1289-1301.
- Y. Carmon, S. Shamai and T. Weissman. "Disproof of the Shamai-Laroia Conjecture" Proc. 27th IEEE Conf. Electrical and Electronics Engineers Eilat, Israel.
- A. Emad and O. Milenkovic. "Semi-quantitative Group Testing" To be presented at International Symposium on Information Theory, ISIT 2012, Boston.
- V. Kostina and S. Verdu. "To code or not to code: revisited" Paper presented at the IEEE Information Theory Workshop (ITW), invited, Lausanne, Switzerland.
- A. Manolakos, Y. Noam, K. Dimou and A.J. Goldsmith. "Blind Null-space Tracking for MIMO Underlay Cognitive Radio Networks" IEEE Globecom, Anaheim, CA, December 2012.
- J.L. Varshney, P. Grover and A. Sahai. "Securing Inductively Coupled Communication" Paper presented at theWorkshop on Information Theory and its Applications (ITA), Atlanta, GA, February 2012.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Doubly Penalized Approach for Reconstruction of Biological Networks" In AIChE Annual Meeting, 497h, Pittsburgh, PA, Oct 28 - Nov 2, 2012.
- S. Aaronson. "Impossibility of Succinct Quantum Proofs for Collision-Freeness" Quantum Information and Computation, 12:21-28, 2012.
- R. Atar and T. Weissman. "Mutual Information, Relative Entropy, and Estimation in the Poisson Channel"
*IEEE Trans. Inform. Theory*, Vol. 58, No. 3, pp. 1302-1318, March 2012. - G. Seroussi, W. Szpankowski and M. Weinberger. "Deinterleaving Finite Memory Processes via Penalized Maximum Likelihood" IEEE Trans. Information Theory, 58.
- B. Ahmadi, H. Asnani, O. Simeone and H.H. Permuter. "Information Embedding on Actions" arXiv preprint arXiv:1207.6084 .
- K. Ganesan, P. Grover, A. Goldsmith and J. Rabaey. "When is coding better than uncoded transmission (hint: not always!)" Paper presented at the Allerton conference on Control, communication and computation. Monticello, IL.
- S. Kamath, S. Kannan and V. Anantharam. "Wireless Networks with Symmetric Demands" Paper presented at the Int. Symp. Information Theory, Cambridge, MA.
- H. Li, C. Liu, L. Burge and W.M. Southerland. "Classification of Protein 3D Structures Using Artificial Neural Network" Paper presented at the 1st International Conference on Information and Intelligent Computing (ICIIC 2012), Chengdu, China.
- A. No, K. Venkat and T.P. Weissman. "Joint Source-Channel Coding of one Random Variable over the Poisson Channel" Paper presented at the International Symposium Information Theory, Cambridge, MA, July 2012.
- A. Sen, D. Mukherjee and R.C. Aguilar. "Endocytosis and cell division" SIAM, Computational Science and Engineering Student Conference, Purdue University, 2012.
- P. Grover, A. Goldsmith and A. Sahai. "Fundamental limits on complexity and power consumption in coded communication" Paper presented at the IEEE International Symposium on Information Theory (ISIT).
- N. Lynch, T. Radeva and S. Sastry. "Asynchronous leader election and MIS using abstract MAC layer" In Proceedings of FOMC 2012: 8th International Workshop on the Foundations of Mobile Computing, Madeira, Portugal, July 2012.
- H.S. Song and D. Ramkrishna. "Dynamic Metabolic Modeling Framework Incorporating Genome Scale Networks: Lumped Hybrid Cybernetic Model (L-HCM)" ISCRE 22. Maastricht, the Netherlands, September 2-5, 2012.
- J. Gaither and M.D. Ward. "Analytic Methods for Select Sets" Probability in the Engineering and Informational Sciences 26, no. 4 (2012): 561-568.
- G. Raskutti, M. Wainwright and B. Yu. "Minimax-optimal rates for sparse additive models over kernel classes via convex programming" J. Machine Learning Research, 13, 389-427, 2012.
- J. Etesami, N. Kiyavash and T.P. Coleman. "Learning Minimal Latent Directed Information Trees" Paper presented at the IEEE International Symposium on Information Theory (ISIT).
- P. Jacquet and W. Szpankowski. "Joint String Complexity for Markov Sources" Paper presented at the 23rd International Meeting on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms, AofA'12, DMTCS Proc., 303-322, Montreal.
- K. Venkat and T. Weissman. "Pointwise Relations between Information and Estimation" Paper presented at the International Symposium Information Theory, Cambridge, MA, July 2012. Best student authored paper award.
- H. Li, C. Liu and L. Burge. "Predicting Protein-Protein Interactions Based on PPI Networks" International Journal of Machine Learning and Computing vol. 2, no. 6, pp. 794-797, 2012.
- H. Asnani, D. Bharadia, M. Chowdhury, I. Ochoa, I. Sharon and T. Weissman. "Lossy compression of quality values via rate distortion theory" arXiv preprint arXiv:1207.5184 .
- Y. Choi, C. Knessl and W. Szpankowski. "On a Recurrence Arising in Graph Compression" 23rd International Meeting on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms, AofA'12, DMTCS Proc., 1-12, Montreal.
- K. Ganesan, Y. Wen, P. Grover, A. Goldsmith and J. Rabaey. "Mixing theory and experiments to choose the "greenest" code-decoder pair" Paper presented at the Globecom .
- H. Li, C. Liu, L. Burge and W.M. Southerland. "Spatial Index and Visualization of Protein Structure" Presented at the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2012) Philadelphia, Pennsylvania.
- T. Choi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Stochastic operator- splitting method for reaction-diffusion systems" The Journal of chemical physics 137, no. 18 (2012): 184102-184102.
- J. Jiao, L. Zhao, H.H. Permuter, Y.H. Kim and T. Weissman. "Universal Estimation of Directed Information" IEEE Trans. Inform. Theory, 2012.
- K. Venkat and T. Weissman. "Pointwise Relations between Information and Estimation in Gaussian Noise" IEEE Trans. Inform. Theory.
- F. Farnoud , Behrouz . Touri and O. Milenkovic. "A Novel Distance-Based Approach to Constrained Rank Aggregation" submitted, 2012 (preliminary papers: CDC 2012, SPCOM 2012).
- H. Asnani, H. Permuter and T. Weissman. "Successive Refinement with Cribbing Decoders and its Channel Coding Duals" Paper presented at the Int. Symp. Information Theory, Cambridge, MA.
- M. Deng, A. Emad and O. Milenkovic. "Causal Compressive Sensing for Gene Network Inference" In Statistical Signal Processing Workshop (SSP), 2012 IEEE, pp. 696-699. IEEE.
- J. Gallier, D. Xu and M. Siqueira. "Parametric pseudo-manifolds" Differential Geometry and its Applications 30, no. 6 (2012): 702-736.
- H. Li and C. Liu. "A Dynamic Data-Driven Framework for Biological Data Using 2D Barcodes" Computational and Mathematical Methods In Medicine 2012.
- P. Ritchey and V. Rego. "A Context-sensitive Tiling System for Information Hiding" Journal of Intelligent Information Hiding and Multimedia Signal Processing, 2012.
- Y. Wu and S. Verdu. "Optimal Phase Transitions in Compressed Sensing" Information Theory, IEEE Transactions on , vol.58, no.10, pp.6241,6263.
- K. Censor-Hillel, B. Haeupler, N. Lynch and M. Medard. "Bounded-Contention Coding for Wireless Networks in the High SNR Regime" Distributed Computing: Proceedings of the 26th International Symposium (DISC 2012), Salvador, Brazil, October 2012, volume 7611 of Lecture Notes in Computer Science, pages 91-105, 2012. Springer.
- Y. Fang, L. Si, N. Somasundaram and Z. Yu. "Mining Contrastive Opinions on Political Texts using Cross-Perspective Topic Model" In Proceedings of the 5th ACM International Conference on Web Search and Data Mining (WSDM) pp 63-72m.
- R. Mirghaderi and A. Goldsmith. "Enegy-Efficient Communication via Feedback" Proceedings of the 46th Annual Conference on Information Sciences and Systems, Princeton, NJ, March 2012.
- K. Venkat and T. Weissman. "Some Old and New Relations between Information and Estimation" Proc. 2012 International Zurich Seminar on Communications, Zurich, Switzerland, February - March, 2012 (invited).
- A.G. Huth, S. Nishimoto, A. Vu and J.L. Gallant. "A Continuous Semantic Space describes the Representation of Thousands of Object and Action Categories Across the Human Brain" Neuron 76, no. 6 (2012): 1210-1224.
- M. Ghaffari, S. Gilbert, C. Newport and H. Tan. "Optimal Broadcast in Shared Spectrum Radio Networks" Proceedings of the 16th International Conference on Principles of Distributed Systems (OPODIS'12), Rome, Italy.
- H. Li, C. Liu and W.M. Southerland. "Blind Identification of Post-translational Modifications via Dynamic Time Warping Model" Paper presented at the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2012), San Diego, CA, May 2012.
- B. Juba. "On Learning Finite-State Quantum Sources" Quantum Information & Computation. 12(1-2):105-118. 2012.
- H.H. Permuter and T. Weissman. "Cascade and Triangular Source Coding with Side Information at the First Two Nodes" IEEE Trans. Inform. Theory, Vol. 58, No. 6, pp. 3309 - 3349, June 2012.
- Y. He, J. Jia and B. Yu. "Reversible MCMC on Markov equivalence classes of sparse directed acyclic graph" arXiv preprint arXiv:1209.5860 .
- K.D. Ko, A.R. Mashariki, C. Liu and L. Burge. "SMISB : A System for Managing Minimum Information from omics' Studies in Systems Biology" Paper presented at the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2012).
- M. Ghaffari, N. Lynch and S. Sastry. "Leader election using loneliness detection" Distributed Computing 25, no. 6 (2012): 427-450.
- H. Li and C. Liu. "Biomarker Identification Using Text Mining" Computational and Mathematical Methods in Medicine 2012 (2012).
- Y. Polyanskiy and S. Verdu. "Empirical distribution of good channel codes with non-vanishing error probability" IEEE Transactions on Information Theory, submitted Dec. 2012.
- S. Cetinta, L. Si and R. Tzur. "Probabilistic Latent Class Models for Predicting Student Performance" Paper presented at the ACM Conference of Information and Knowledge Management (CIKM), Maui, Hawaii, USA.
- F. Farhangmehr, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Information theoretic-based approach for data-driven biological networks reconstruction" Paper presented at the 31st Annual Research Expo, University of California, San Diego.
- A. Kulkarni and T.P. Coleman. "An Optimizer.s Approach to Stochastic Control Problems with Non-classical Information Structure" Paper presented at the IEEE International Conference on Decision and Control (CDC), Maui, Hawaii, USA,.
- S. Rini , E. Kurniawan and A. Goldsmith. "Primary Rate-Splitting Achieves Capacity for the Gaussian Cognitive Interference Channel" Paper presented at the Proc. 2012 IEEE Information Theory Workshop, Lausanne, Switzerland. September 2012.
- K. Venkat , T. Weissman, Y. Carmon and S. Shamai. "Information, Estimation and Lookahead" To appear in Proceedings of the 50th Annual Allerton Conference on Communications, Control and Computing, Monticello, Illinois, 2012.
- H. Li, C. Liu, X. Liu and W. Southerland. "Collaboration Visualization on Large Dataset for Protein-Protein Interaction Networks" 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2012), May 2012, pp. 177-184.
- K. Bader, M. Atallah and C. Grothoff. "Efficient Relaxed Search in Hierarchically-Clustered Sequence Datasets"
*Journal of Experimental Algorithmics (JEA)*17, no. 1 (2012): 1-4. - P. Jacquet, C. Knessl and W. Szpankowski. "Counting Markov Types, Balanced Matrices, and Eulerian Graphs" IEEE Trans. Information Theory, 58, 4261-4272, 2012.
- D. Mukherjee, C.B. Hanna and R.C. Aguilar. "Artificial Neural Network for the Prediction of Tyrosine-Based Sorting Signal Recognition by Clathrin-Associated Adaptor Complexes" Journal of Biomedicine and Biotechnology, (Special Issue on Advanced Computational Methods in Molecular Medicine), 2012.
- D. Shutin, S.R. Kulkarni and H.V. Poor. "Incremental reformulated automatic relevance determination" Signal Processing, IEEE Transactions on 60, no. 9 (2012): 4977-4981.
- M. Chowdhury, A. Goldsmith and T. Weissman. "The Per-User Number of Receive Antennas in Uncoded Non-Cooperating Transmissions can be Arbitrarily Small" Paper presented at the Proc. 50th Annu. Allerton Conf. Communication, Control, and Computing, Monticello, Illinois.
- S. Kamath and V. Anantharam. "An information-theoretic meta-theorem on edge-cut bounds" An information-theoretic meta-theorem on edge-cut bounds.
- B. Oguz and V. Anantharam. "Pointwise lossy source coding theorem for sources with memory" Paper presented at the IEEE International Symposium on Information Theory, Cambridge, Massachusetts, July 2012.
- S. Aaronson. "Why Philosophers Should Care About Computational Complexity" To appear in an Alan Turing centennial volume (Jack Copeland and Oron Shagrir, editors),MIT Press, 2012.
- S.M. Pike, S. Sastry and J.L. Welch. "Failure detectors encapsulate fairness" Distributed Computing, 2012.
- D. Harris, M. Rwebangira, C. Liu and L. Burge. "Empirical Evaluation of Strategy-Proofness of Majority Judgment" Paper presented at the The 84th National Technical Association Conference (NTA 2012), Sep. 2012, Baltimore, MD.
- Y. Steinberg and T. Weissman. "The Degraded Broadcast Channel with Action-Dependent States" Paper presented at the International Symposium Information Theory, Cambridge, MA, July 2012.
- A. Gohari and V. Anantharam. "Evaluation of Marton's Inner Bound for the General Broadcast Channel" IEEE Trans. On Information Theory, Vol. 58, No. 1, pp. 608 -619. 2012.
- H. Li, C. Liu, L. Burge and W. Southerland. "Identification of two post-translational modifications via tandem mass spectrometry" International Journal Of Computational Biology and Drug Design 5, no. 3 (2012): 314-324.
- M. Yakout, M.J. Atallah and A. Elmagarmid. "Efficient and Practical Approach for Private Record Linkage" In print for Journal of Data and Information Quality, Vol. 3, No. 3.
- J. Jiao, H.H. Permuter, L. Zhao, Y.H. Kim and T. Weissman. "Universal Estimation of Directed Information via Sequential Probability Assignments" Paper presented at the Int. Symp. Information Theory, Cambridge, M.
- V. Kulkarni, P. Grover, M. Riedel and A. Goldsmith. "Retroactivity cancelation in signaling cascades" Paper presented at the 9th Annual Conference on Foundations of Nanoscience, Snowbird, Utah USA.
- V. Misra and T. Weissman. "The Porosity of Additive Noise Sequences" Paper presented at the Int. Symp. Information Theory, Cambridge, MA, July 2012.
- P. Ritchey and V. Rego. "Covert Channels in Combinatorial Games" Proceedings of the International Workshop on Distributed Simulation and Online Gaming (DISIO 2012) - ICST Conference on Simulation Tools and Techniques (SIMUTools 2012), Desenzano, Italy, March 2012.
- K. Venkat, T. Weissman, Y. Carmon and S. Shamai. "Lookahead, Estimation and Information in the Gaussian channel" Proc. 50th Annu. Allerton Conf. Communication, Control, and Computing, Monticello, Illinois, October 2012.
- Y. Benjamini and T.P. Speed. "Summarizing and correcting the GC content bias in high-throughput sequencing"
*Nucleic Acids Research*, 2012. - H. Song and S. Ramkrishna. "Prediction of dynamic behavior of mutant strains from limited wild-type dat" Metabolic Engineering, 14, 69-80.
- B. Oguz and V. Anantharam. "Long range dependent Markov chains with applications" Paper presented by the IEEE ITA 2012 proc., San Diego, CA, February 2012.
- S. Shang, P.W. Cuff, S.R. Kulkarni and P. Hui. "An Upper Bound on the Convergence Time for Distributed Binary Consensus" Paper presented at the 15th International Conference on Information Fusion, Singapore, July 2012.
- Q. Wang, L. Si and D. Zhang . "A Discriminative Data-dependent Mixture-Model Approach for Multiple Instance Learning in Image Classification" Proceedings of the 12th European Conference on Computer Vision (ECCV-12), Firenze, Italy, 2012.
- S. Aaronson. "Quantum Computing Since Democritus" Contract signed with Cambridge University Press; should appear in 2012.
- B. Wagner, P. Viswanath and S.R. Kulkarni. "Probability Estimation in the Rare-Events Regime" IEEE Transactions on Information Theory, Vol. 57, No. 6, pp. 3207-3229.
- J. Mairal, R. Jenatton, G. Obozinski and F. Bach. "Topographic dictionary learning with structured sparsity" In Proceedings of the SPIE conference on wavelets and sparsity XIV, San Diego, CA, August 2011. (invited).
- C. Quinn, N. Kiyavash and T.P. Coleman. "A Minimal Approach to Causal Inference on Topologies with Bounded Indegree" Paper presented at the IEEE Conference on Decision and Control, Orlando, FL, December 2011.
- G. Kollias, S. Mohammadi and A. Grama. "Network Similarity Decomposition for Network Alignment" Data Mining and Knowledge Discovery 22(1-2):291-335, Springer, January 2011.
- S. Sadasivam, P. Moulin and T.P. Coleman. "A Message-Passing Approach to Combating Desynchronization Attacks" IEEE Transactions on Information Forensics and Security.
- C. Quinn, N. Kiyavash and T.P. Coleman. "Equivalence Between Minimal Generative Model Graphs and Directed Information Graphs" IEEE International Symposium on Information Theory, August 2011.
- A. Drucker. "Efficient Probabilistically Checkable Debates" In Proceedings of RANDOM 2011.
- T. Narayanan, M. Gersten, S. Subramaniam and A. Grama. "Modularity detection in protein- protein interaction networks" BMC Research Notes,4:569, 2011.
- H. Li, L. Scott, C. Liu, M. Rwebangira, L. Burge and W.M. Southerland. "Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach" The 7th International Symposium on Bioinformatics Research and Applications (ISBRA 2011), May 2011, Bioinformatics Research and Applications Lecture Notes in Computer Science, 2011, Volume 6674/2011, 253-261.
- M.J. Atallah and T.W. Duket. "Pattern Matching in the Hamming Distance with Thresholds" Information Processing Letters, IPL, 111(14), (2011), p. 674-677.
- T.P. Colemann, M. Yanike, W. Suzuku and E.N. Brown. "A mixed-filter algorithm for dynamically tracking learning from multiple behavioral and neurophsiological measures" In The Dynamic Brain: An Exploration of Neuronal Veriability and Its Functional Significance, Editors: Mingzhou Ding and Dennis Glanzman, Oxford University Press, 1/1/2011.
- I.H. Hou and P.R. Kumar. "Broadcasting Delay-Constrained Traffic over Unreliable Wireless Links with Network Coding" To appear in MobiHoc 2011, May 16-20, 2011, Paris.
- Z. Zeng, Y. Gao, P.R. Kumar and K. Tan. "CHAIN: Introducing Minimum Controlled Co-ordination into Random Access MAC" Proceedings of the 30th IEEE International Conference on Computer Communications (IEEE INFOCOM 2011), pp. 2669-2677, Shanghai, April 10-15, 2011.
- . "Epidermal Electronics" Science, 2011.
- G. Wang, S.R. Kulkarni, H.V. Poor and D. Osherson. "Aggregating Large Sets of Probabilistic Forecasts by Weighted Coherent Adjustment" Decision Analysis, Vol. 8, No. 2, pp. 128-144.
- J. Yu, S.R. Kulkarni and H.V. Poor. "A Distributed Spring Model Algorithm for Sensor Localization Using Dimension Expansion and Hyperbolic Tangential Force" Proceedings 4th International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMPSAP '11), San Juan, Puerto Rico, December 2011.
- J. Lunden, V. Koivunen, S.R. Kulkarni and H.V. Poor. "Reinforcement learning based distributed multiagent sensing policy for cognitive radio networks" Fifth IEEE International Symposium on New Frontiers in Dynamic Spectrum Access Networks 2011, (DySPAN 2011).
- V. Anantharam and T. Konstantopoulos. "Integral representation of Skorokhod reflection" Proceedings of the American Mathematical Society, Vol. 139, No. 6, pp. 2227 -2237, 2011.
- A. Sarkar, S. Srinivasan, B. Behinaein and S. Datta. "Modeling All Spin Logic Multimagnet Networks Interacting via Spin Currents" Proc. IEDM (2011).
- A. Drucker. "Improved Direct Product Theorems for Randomized Query Complexity" In Proceedings of IEEE Conference on Computational Complexity 2011. Won the Ronald V. Book Best Student Paper Award.
- A. Jain, S.R. Kulkarni and S. Verdu. "Energy Efficiency of Decode-and- Forward for Wideband Wireless Multicasting" IEEE Trans. Information Theory, Vol. 57, No. 12, pp. 7695 - 7713, Dec. 2011.
- S. Subramaniam, E. Fahy, S. Gupta, M. Sud, R.W. Byrnes, D. Cotter, A.R. Dinasarapu and M.R. Maurya. "Bioinformatics and systems biology of the lipidome" Chem Rev, 111(10), 6452-90.
- F. Couzinie-Devy, J.M. Florent, F. Bach and J. Ponce. "Dictionary learning for deblurring and digital zoom" arXiv preprint arXiv:1110.0957.
- S. Shang, P. Hui, S.R. Kulkarni and P.W. Cuff. "Wisdom of the Crowd: Incorporating Social Influence in Recommendation Models" Proceedings 3rd IEEE International Workshop on Hot Topics in Peer-to-Peer Computing and Online Social Networking (HotPost), Tainan, Taiwan, December 2011. (Best Paper Award).
- B. Behin-Aein, A. Sarkar, S. Srinivasan and S. Datta. "Switching Energy and Delay of Spin Logic Devices" Applied Physics Letters 98, Issue 12, March 2011, Pages 123510 -123510-3.
- S. Mohammadi and A. Grama. "Biological Network Alignment" In functional Coherence of Molecular Networks in Bioinformatics, 2011.
- I.H. Hou, A. Truong, S. Chakraborty and P.R. Kumar. "Optimality of Periodwise Static Priority Policies in Real-time Communications" To appear in Proceedings of 50th IEEE Conference on Decision and Control and European Control Conference. Orlando, December 12-15, 2011.
- Z. Zeng, Y. Gao and P.R. Kumar. "SOFA: A Sleep-Optimal Fair-Attention scheduler for the Power-Saving Mode of WLANs" Proceedings of the International Conference On Distributed Computing Systems (ICDCS 2011), pp. 87-98, June 21-24, 2011, Minneapolis.
- M. Drmota and W. Szpankowski. "The Expected Profile of Digital Search Trees" J., Combin.Theory, Ser. A, 118, pp.1939-1965, 2011.
- B. Juba. "Universal Semantic Communication" Springer, Berlin, 2011.
- S. Rini, D. Tuninetti, N. Devroye and A. Goldsmith. "On the capacity of the interference channel with a cognitive relay" arXiv preprint arXiv:1107.4600 .
- Y. Chen, A.J. Goldsmith and Y.C. Eldar. "Shannon Meets Nyquist: The Interplay between Capacity and Sampling" Paper presented at the 49th Annual Allerton Conference on Communication, Control, and Computing, pp. 1090 - 1097, Monticello, IL.
- M. Drmota and W. Szpankowski. "A Discrete Divide and Conquer Recurrence" Proc. SODA 2011, San Francisco, 2011.
- A. Drucker. "A PCP Characterization of AM" In Proceedings of ICALP 2011.
- Y. Qi, Z. Xu and F. Yan. "Sparse matrix-variate Gaussian process blockmodels for network modeling" in Proceedings of the 27th Conference on Uncertainty in Artificial Intelligence, 8 pages, Barcelona, Spain, 2011.
- P. Nicodeme and M.D. Ward. "Towards the Variance of the Profile of Suffix Trees" Report of the Mini-Workshop on Random Trees, Information and Algorithms, Mathematisches Forschungsinstitut Oberwolfach, Report, 2011.
- J.O. Dubuis, G. Tkacik, E.F. Wieschaus, T. Gregor and W. Bialek. "Positional information, in bits" arXiv preprint arXiv:1201.0198 .
- Y. Wu, H. Zheng, R. Calderbank, S.R. Kulkarni and H.V. Poor. "On Optimal Precoding in Wireless Multicast Systems" Proceedings IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP '11), Prague, Czech Republic, May 2011.
- M. Koyuturk, S. Subramaniam and A. Grama. "Functional Coherence of Molecular Networks in Bioinformatics" Springer, 2011.
- H. Zheng, S.R. Kulkarni and H.V. Poor. "Consensus Clustering: The Filtered Stochastic Best-One-Element-Move Algorithm" Proceedings of 45th Conference on Information Sciences and Systems, Baltimore, MD, March, 2011.
- B. Juba. "Brief Announcement: Reliable End-user Communication Under a Changing Packet Network Protocol" In Proceedings of the 30th ACM Symposium on Principles of Distributed Computing (PODC 2011), pages 339-340, 2011.
- D. Zhang, Y. Liu and L. Si. "Learning Beyond the Predefined Label Space" International ACM SIGKDD Conference on Knowledge Discovery and Data Mining (SIGKDD), 2011. 157 (Acceptance Rate: 17.5%).
- Y. Fang, L. Si and A. Mathur. "Discriminative Probabilistic Models for Expert Search in Heterogeneous Information Sources" Journal of Information Retrieval. (IR) 14(2):158-177 (19 pages)2011.
- Y. Polyanskiy, H.V. Poor and S. Verdu. "Feedback in the Non-Asymptotic Regime" IEEE Transactions on Information Theory, V ol. 57, No. 8, pp. 4903-4925, Aug. 2011.
- V. Kostina and S. Verdu. "Fixed-length lossy compression in the finite blocklength regime: Gaussian source" Proc. 2011 IEEE Information Theory Workshop, Paraty, Brazil.
- A. Tulino, G. Caire, S. Shamai and S. Verdu. "Beyond IID Gaussian Ma- trices in Compressed Sensing" Paper presented at the 45th Asilomar Conference on Signals, Systems and Computers, Pacific Grove, California, November 2011.
- C. Omar, A. Akce, M. Johnson, T. Bretl, R. Ma, E. Maclin, M. McCormik and T.P. Coleman. "A Feedback Information-Theoretic Approach to the Design of Brain-Computer Interfaces" International Journal on Human-Computer Interaction, special issue on Current Trends in Brain-Computer Interface (BCI) Research and Development, Volume 27, Issue 1, January 2011, pages 5-23..
- K. Censor-Hillel, S. Gilbert, F. Kuhn, N. Lynch and C. Newport. "Structuring Unreliable Radio Networks" in Proceedings of the 30th Annual ACM SIGACT-SIGOPS Symposium on Principles of Distributed Computing, San Jose, California, June 6-8, 2011.
- H. Asnani, H.H. Permuter and T. Weissman. "Probing Capacity" IEEE Trans. Inform. Theory, Vol. 57, No. 11, pp. 7317-7332, November 2011.
- D. Zhang, F. Wang, L. Si and T. Li. "Maximum Margin Multiple Instance Clustering with its Applications to Image and Text Clustering" IEEE Transactions on Neural Networks (TNN). Vol 22, No. 5, pp. 739-751 (13 pages).
- C. Li, T. Chen and T.P. Coleman. "A Memoryless Channel Coding Methodology for Infinite- Memory Queuing Timing Channels" Paper presented at the IEEE International Symposium on Information Theory, St. Petersburg, Russia.
- T. Moon, T. Weissmanand and J.Y. Kim. "Discrete denoising of heterogeneous two-dimensional data" Paper presented at the International Symposium Information Theory, Saint- Petersburg, Russia, July 31 - August 5, 2011.
- I. Hou and P.R. Kumar. "Queueing Systems with Hard Delay Constraints: A Framework and Solutions for Real-Time Communication over Unreliable Wireless Channels" Submitted to Queueing Systems: Theory and Applications. Submitted April 27, 2011.
- A. Sen, D. Mukherjee, K. Madhivanan, B.G. Coon, D.F. Edwards III, C.J. Staiger and R.C. Aguilar. "Evolution of the membrane localization determinants within the epsin family of endocytic proteins" PUBAMS, 2011.
- Y. Qi, Z. Xu and F. Yan. "Sparse matrix-variate t process blockmodels" in Proceedings of the 25th Conference on Artificial Intelligence, 6 pages, San Francisco, CA, 2011.
- S. Cetintas, L. SI, H. Aagard and K. Bowen. "Micro-Blogging in Classroom: Classifying Students' Relevant and Irrelevant Questions in a Micro-Blogging Supported Classroom" IEEE Transactions on Learning Technologies (TLT) Vol. 4, No. 4, pp. 292-300. 2011.
- Y. Sun, Q. Wang, N. Li, E. Bertino and M.J. Atallah. "On the Complexity of Authorization in RBAC under Qualification and Security Constraints" IEEE Transactions Dependable Secure Computing Vol. 8 No. 6 pp. 883-897.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Data-Driven Network Reconstruction of Biological Systems: Statistical and Optimization-Based Methods" Paper presented at the AICHE 2011 General Meeting, Minneapolis, MN.
- A. Gohari and V. Anantharam. "Generating Dependent Random Variables over Networks" Proceedings of the 2011 IEEE Information Theory Workshop, Paraty, Brazil.
- S. Kim, K. Takahashi, N. Hatsopoulos and T.P. Coleman. "Information Transfer Between Neurons in the Motor Cortex Triggered by Visual Cues" Paper presented at the IEEE Engineering in Medicine and Biology Society Annual Conference .
- Y. Wu and S. Verdu. "Witsenhausens Counterexample: a View from Optimal Transport Theory" Paper presented at the 50th IEEE Conference on Decision and Control and European Control Conference, Orlando, Florida, December 2011.
- S. Aaronson. "The Equivalence of Sampling and Searching" In Proceedings of Computer Science in Russia (CSR) 2011, p. 1-14.
- Y. Polyanskiy, H.V. Poor and S. Verdu. "Minimum Energy to send k Bits Through the Gaussian Channel With and Without Feedback" IEEE Transactions on Information Theory, Vol. 57, No. 8, pp. 4880-4902, Aug. 2011.
- V. Kostina and S. Verdu. "Fixed-Length Lossy Compression in the Finite Blocklength Regime: Discrete Memoryless Sources" Paper presented at the 2010 IEEE Int. Symposium on Information Theory, St. Petersburg, Russia.
- T. Riedl, T.P. Coleman and A.C. Singer. "Finite Block-Length Achievable Rates for Queuing Timing Channels" Paper presented at the IEEE Information Theory Workshop (ITW), Paraty, Brazil, October 2011.
- A. Tulino, G. Caire, S. Shamai and S. Verdu. "Support Recovery with Sparsely Sampled Free Random Matrices" Paper presented at the 2010 IEEE Int. Symposium on Information Theory, St. Petersburg, Russia, July - Aug, 2011.
- Y. Polyanskiy , H.V. Poor and S. Verdu. "Dispersion of the Gilbert-Elliott Channel" IEEE Trans. on Information Theory, vol. 57, no. 4, April 2011, pp. 1829-1848.
- M.W. Sears, E. Raskin and M.J. Angilletta, Jr.. "The world is not flat: defining relevant thermal landscapes in the context of climate change" Integrative and Comparative Biology 51: 666-675.
- Y.K. Chia, H. Asnani and T. Weissman. "Multi-terminal source coding with action dependent side information" Paper presented at the Int. Symp. Information Theory, Saint-Petersburg, Russia.
- A. Sen. "Information theory and cell biology: A necessary synergism for fighting cancer and genetic diseases" Student seminar series, NSF Center for Science of Information (CSoI), Purdue University, 2011.
- A. Emad and O. Milenkovic. "Symmetric Group Testing and Superimposed Codes" ITW Paraty Brazil, 2011.
- W. Szpankowski and S. Verdu. "Minimum Expected Length of Fixed- to-Variable Lossless Compression Without Prefix Constraints" IEEE Transactions on Information Theory, Vol. 57, No. 7, pp. 4017-4025.
- S.K. Gorantla and T.P. Coleman. "Equivalence Between Reliable Feedback Communication and Nonlinear Filter Stability" Paper presented at the IEEE International Symposium on Information Theory.
- Y.H. Kim, H.H. Permuter and T. Weissman. "Continuous-Time Directed Information and Its Role in Communication" Proc. of IEEE Information Theory Workshop, Paraty, Brazil.
- J. Lunden, V. Koivunen, S.R. Kulkarni and H.V. Poor. "Exploiting spatial diversity in multiagent reinforcement learning based spectrum sensing" Proceedings 4th International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP '11), San Juan, Puerto Rico, Dec. 13-16, 2011.
- D. Shutin, T. Buchgraber, S.R. Kulkarni and H.V. Poor. "Fast Adaptive Variational Sparse Bayesian Learning with Automatic Relevance Determination" Proceedings IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP '11), Prague, Czech Republic, May 2011.
- Y. Wu, S. Shamai and S. Verdu. "Degrees of Freedom of the Interference Channel: a General Formula" Paper presented at the 2010 IEEE Int. Symposium on Information Theory, pp. 1344-1348, St. Petersburg, Russia, July - August 2011.
- S. Aaronson and A. Drucker. "Advice Coins for Classical and Quantum Computation" In Proceedings of ICALP 2011, p. 61-72.
- M. Khabbazian, F. Kuhn, N. Lynch and M. Medard. "MAC design for analog network coding" in Proceedings of the 7th ACM SIGACT/SIGMOBILE International Workshop on Foundations of Mobile Computing (FOMC 2011), pp.42-51. San Jose, CA, June 2011.
- G. Kollias, S. Mohammadi and A. Grama. "Network Similarity Decomposition (NSD): A Fast and Scalable Approach to Network Alignment" IEEE Transactions on Knowledge and Data Engineering (TKDE) 99(1), 2011.
- T. Weissman and H.H. Permuter. "Source Coding with a Side Information Vending Machine" IEEE Trans. Inform. Theory, Vol. 57, No. 7, pp. 4530-4544.
- G. Bresler, D. Cartwright and D. Tse. "Feasibility of interference alignment for the MIMO interference channel: the symmetric square case" Paper presented at the Information Theory Workshop, Paraty, Brazil.
- J. Marial and B. Yu. "Path coding penalties for directed acyclic graphs" In 4th NIPS Workshop on Optimization for Machine Learning (OPT), January 2011.
- C. Quinn, T.P. Coleman, N. Kiyavash and N.G. Hatsopoulos. "Estimating the directed information to infer causal relationships in ensemble neural spike train recordings" Journal of Computational Neuroscience, January 2011.
- T. Moon, T. Weissman and J.Y. Kim. "Computationally Efficient Denoising for Heterogeneous Images using Quadtree and Space-Filling Curves" 17th International Conference on Digital Signal Processing (DSP2011), July 6-8, 2011, Corfu, Greece.
- H. Asnani and T. Weissman. "On real time coding with limited lookahead" Communication, Control, and Computing (Allerton), 2011 49th Annual Allerton Conference on , vol., no., pp.60,67, 28-30 Sept. 2011.
- H. Yuan and M.J. Atallah. "Running Max/Min Filters Using 1+o(1) Comparisons per Sample" IEEE Trans. Pattern Anal. Mach. Intell. 33(12): 2544-2548 (2011).
- H. Zheng, S.R. Kulkarni and H.V. Poor. "Attribute-distributed Learning: Models, Limits and Algorithms" IEEE Transactions on Signal Processing, Vol. 59, No. 1, pp. 386-398.
- G. Wang, S.R. Kulkarni, H.V. Poor and D.N. Osherson. "Improving Aggregated Forecasts of Probability" Proceedings of 45th Conference on Information Sciences and Systems, Baltimore, MD, March 2011.
- K.D. Kim and P.R. Kumar. "A Real-Time Middleware for Networked Control Systems and Application to an Unstable System" Submitted to IEEE Transactions on Control Systems Technology. Submitted June 3, 2011.
- Y. Fang, N. Somasundaram, L. Si, J. Ko and A. Mathur. "Analysis of an Expert Search Query Log" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) (Poster) (Acceptance Rate 33.2%).
- J. Lunden, V. Koivunen, S.R. Kulkarni and H.V. Poor. "Reinforcement Learning Based Distributed Multiagent Sensing Policy for Cognitive Radio Ad Hoc Networks" Proceedings IEEE Symposium on New Frontiers in Dynamic Spectrum Access Networks Symposium (DySPAN), Aachen, Germany, May 2011 .
- Y. Polyanskiy and S. Verdu. "Relative entropy at the output of a capacity-achieving code" Paper presented at the Forty-Ninth Annual Allerton Conference, Uni- versity of Illinois at Urbana-Champaign, Monticello, Illinois, Sep. 29- Oct. 1, 2011.
- O. Goldreich, B. Juba and M. Sudan. "Goal-Oriented Communication" Brief announcement, Proc. PODC, full version ECCCTR 09-75, 2011.
- E. Ordentlich and T. Weissman. "Bounds on the Entropy Rate of Binary Hidden Markov Processes" In Entropy of Hidden Markov Processes and Connections to Dynamical Systems, Cambridge University Press, B. Marcus, K. Petersen and T. Weissman (eds.), July 2011, pp. 117-171.
- S. Aaronson and A. Arkhipov. "The computational complexity of linear optics" In Proceedings of ACM STOC 2011, p. 333-342.
- K.D. Kim, S. Mitra and P.R. Kumar. "Computing Bounded eps-Reach Set with Finite Precision Computations for a Class of Linear Hybrid Automata" Proceedings of the 14th International Conference on Hybrid Systems: Computation and Control (HSCC 2011), pp. 113-122, Chicago, April 12-14, 2011.
- P. Jacquet and W. Szpankowski. "Limiting Distribution of Lempel Ziv'78 Redundancy" Paper presented at the 2011 International Symposium on Information Theory, 1609-1612, St. Petersburg.
- K. Rohe, S. Chatterjee and B. Yu. "Spectral clustering and the high-dimensionsal Stochastic Block Model" Annals of Statistics, Volume 39, Number 4, 1878-1915, 2011.
- S. Cetintas, M. Rogati, L. Si and Y. Fang. "Identifying Similar People in Professional Social Networks with Discriminative Probabilistic Models" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) (Poster) (Acceptance Rate 33.2%).
- T. Moon, T. Weissman and J.Y. Kim. "Discrete denoising of heterogeneous twodimensional data" Int. Symp. Information Theory, Saint-Petersburg, Russia, July 31 - 154 August 5, 2011.
- J. Mairal, R. Jenatton, G. Obozinski and F. Bach. "Convex and network flow optimization for structured sparsity" Journal of Machine Learning Research, Vol. 12, pp. 2649-2689, 2011.
- Y.K. Chia and T. Weissman. "Cascade and Triangular source coding with causal side information" Int. Symp. Information Theory, Saint-Petersburg, Russia.
- I. Wang, S. Kamath and D.N.C. Tse. "Two Unicast Information Flows over Linear Deterministic Networks" Paper presented at the International Symposium on Information Theory 2011, St. Petersburg, Russia, July - August 2011.
- H. Kowshik and P.R. Kumar. "Optimal Function Computation in Directed and Undirected Graphs" IEEE Transactions on Information Theory. Submitted April 12, 2011.
- K.B. Frikken, H. Yuan and M.J. Atallah. "Secure Authenticated Comparisons" Proceedings of the 9th International Conference on Applied Cryptography and Network (ACNS 2011), Pages 514-531, 2011.
- L. Shen, S. Kim, Y. Qi, M. Inlow, S. Swaminathan, K. Nho, J. Wan, S.L. Risacher, L.M. Shaw, J.Q. Trojanwoski, M.W. Weiner and A.J. Saykinl. "Identifying Neuroimaging and Proteomic Biomarkers for MCI and AD via the Elastic Net" International Workshop on Multimodal Brain Image Analysis (MBIA), Toronto, Canada, 2011.
- Y.K. Chia, H. Asnani and T. Weissman. "Multiterminal Source Coding with Action Dependent Side Information" In Information Theory Proceedings (ISIT), 2011 IEEE International Symposium on, pp. 2035-2039. IEEE, 2011.
- L. Jiang, V. Anantharam and J. Walrand. "How bad are selfish investments in networks security" IEEE/ACM Transactions on Networking, pp. 549-560, 2011.
- H. Asnani, H. Permuter and T. Weissman. "To Feed or Not to Feed Back" Paper presented at the Int. Symp. Information Theory, Saint-Petersburg, Russia.
- P. Cuff, T. Cover, G. Kumar and Z. Lei. "A lattice of gambles" Paper presented at the Int. Symp. Information Theory.
- Y. Polyanskiy and S. Verdu. "Scalar Coherent Fading Channel: Dispersion Analysis" Paper presented at the 2010 IEEE International Symposium on Information Theory,St. Petersburg, Russia, July 31-Aug. 5, 2011.
- A. Gupta and S. Verdu. "Operational Duality Between Lossy Compression and Channel Coding" IEEE Trans. on Information Theory, vol. 57, no. 6, June 2011, pp. 3171-3179.
- B. Marcus, K. Petersen and T. Weissman. "Entropy of Hidden Markov Processes and Connections to Dynamical Systems" Cambridge University Press, July 2011.
- C. Avin, M. Borokhovich, k. Censor-Hillel and Z. Lotker. "Order Optimal Information Spreading Using Algebraic Gossip" In Proceedings of the 30th Annual ACM Symposium on Principles of Distributed Computing (PODC), pages 363-372, 2011.
- S. Kim and T.P. Coleman. "Team Decision Theory and Brain-Machine Interfaces" Invited Paper, IEEE Conference on Neural Engineering, April 27-May 1, 2011.
- Y. Wu and S. Verdu. "MMSE dimension" IEEE Trans. on Information Theory, Vol. 57, No. 8, pp. 4857-4879.
- F. Kuhn and R. Oshman. "The complexity of data aggregation in directed networks" In David Peleg, editor, Distributed Computing: 25th International Symposium on Distributed Computing (DISC 2011), Rome, Italy, September 2011, volume 6950 of Lecture Notes in Computer Science, pages 416.431. Springer.
- R. Mirghaderi, S. Lall and A. Goldsmith. "Coding Strategies for a Class of Decentralized Control Problems with Limited Communication" in Proceedings of the 50th IEEE Conference on Decision and Control, Orlando, Florida, Dec. 2011.
- M.S. Schuler, M.W. Sears and M.J. Angilletta. "Food consumption does not affect the preferred body temperature of Yarrow's spiny lizard (Sceloporous jarrovi)" Journal of Thermal Biology, 2011, 36:112-115.
- J.W. Brown, M.J. Catanho and R. Gilette. "Mapping and characterizing the chemotactile sensory network in the CNS of the sea-slug" Poster presented as part of the Society for Neuroscience Annual Meeting, Washington, DC. 2011.
- S. Cetintas, D. Chen, L. Si, B.G. Shen and Z. Datbayev. "Forecasting Counts of User Visits for Online Display Advertising with Prob. Latent Class Models" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) (Poster) (Acceptance Rate 33.2%).
- J. Naor, D. Panigrahi and M. Singh. "Online Node-weighted Steiner Tree and Related Problems" To appear in IEEE Symposium on Foundations of Computer Science (FOCS), 2011.
- M. Shokouhi and Luo. Si. "Federated Search" Foundations and Trends in Information Retrieval (FnTIR), 5(1):1-102 (102 Pages).
- S. Kamath, U. Niesen and P. Gupta. "The capacity per unit energy of large wireless networks" Paper presented at the International Symposium on Information Theory 2011, St. Petersburg, Russia.
- A. Sen, D. Mukherjee, D. Glover, C.B. Hannah and R.C. Aguilar. "The Saccharomyces cerevisiae Na+ ATPase exporter ENa1 is a yeast epsin-specific endocytic cargo" Paper presented at the American Society of Cell Biology 51st Annual Meeting. Denver, CO, December 2011.
- L. Vega, M.J. Catanho, C.J. Quinn, E. Johnson, D.L. Jones, T.P. Coleman, D.E. Leckband and H. Kong. "Electrophysiological and neuronal localization techniques for cultured aplysia neurons" Poster presented as part of the Society for Neuroscience Annual Meeting, Washington, DC. 2011.
- Y. Gao, C.W. Tan, Y. Huang, Z. Zeng and P.R. Kumar. "Feasibility and Optimization of Delay Guarantees for Non-homogeneous Flows in IEEE 802.11 WLANs" Proceedings of the 30th IEEE International Conference on Computer Communications (IEEE INFOCOM 2011), pp. 2660-2668, Shanghai, April 10-15, 2011.
- W. Shing, R. Hariharan, N.J.A. Harvey and D. Panigrahi. "A General Framework for Graph Sparsification" Proceedings of the 43rd ACM Symposium on Theory of Computing (STOC), June 2011.
- H.H. Permuter, Y.H. Kim and T. Weissman. "Interpretations of Directed Information in Portfolio Theory, Data Compression, and Hypothesis Testing" IEEE Trans. Inform. Theory, Vol. 57, No. 6, pp. 3248-3259, June 2011.
- P. Grover and C. Langbort. "The role of common ``context'' in signaling" Paper presented at the IEEE Conference on Decision and Control (CDC).
- K.D. Ko, C. Liu and M. Rwebangira. "The Development of a Proteomic Analyzing Pipeline for Identifying Proteins with Multiple RRMs and Predicting their Domain Boundaries" Paper presented at the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2011), Atlanta, GA.
- R. Ma and T.P. Coleman. "Generalizing the Posterior Matching Scheme to Higher Dimensions via Optimal Transportation" Paper presented at the Allerton Conference on Communication, Control, and Computing, Champaign-Urbana, IL, September 2011.
- H.S. Song and D. Ramkrishna. "Lumped Hybrid Cybernetic Model (L-HCM): A Potential Tool for Electrofuels Research" Paper presented at the SBE's conference on Electrofuels Research. Providence, RI, November 6-9, 2011.
- R. Xiang and J. Neville. "Relational Learning with One Network: An Asymptotic Analysis" Proceedings of the 14th International Conference on Artificial Intelligence and Statistics (AISTAT), Fort Lauderdale, FL, 2011.
- B. Juba and M. Sudan. "Efficient Semantic Communication via Compatible Beliefs" Proc. ICS, 2011.
- H. Aftab, N. Raj, P. Cuff and S. Kulkarni. "Mutual Information Scheduling for Ranking" Fusion 2011.
- F. Kuhn, Y. Moses and R. Oshman. "Coordinated Consensus in Dynamic Networks" In Proceedings of the 30th Annual ACM SIGACT-SIGOPS Symposium on Principles of Distributed Computing, San Jose, California, June 6-8, 2011.
- F. Kuhn, Y. Moses and R. Oshman. " Coordinated consensus in dynamic net- works" In Proceedings of the 30th Annual ACM Symposium on Principles of Distributed Computing (PODC), San Jose, California.
- M. Sudan. "Patterns hidden from simple algorithms: Technical perspective on Mark Braverman's article 'Poly-logarithmic independence fools bounded-depth Boolean circuits" Communications of the ACM, 54(4):107, 2011.
- M.J. Catanho, T.P. Coleman and R. Gilette. "Modeling Addiction in a Predatory Seaslug" Poster presented as part of the Society for Neuroscience Annual Meeting, Washington, DC. 2011..
- V. Chen, M. Sudan and N. Xie. "Property Testing via Set-Theoretic Operations" Proceedings of Innovations in Computer Science (ICS 2011), pages 211-222, Tsinghua University, Beijing, China, January 2011.
- D. Panigrahi and S. Gollapudi. "Result Enrichment in Commerce Search using Browse Trails" Proceedings of the ACM International Conference on Web Search and Data Mining (WSDM), 2011.
- M. Atallah, Y. Qi and H. Yuan. "Asymptotically Efficient Algorithms for Skyline Probabilities of Uncertain Data"
*ACM Transactions on Database Systems*, Vol. 36 No. 2, 28 pages, 2011. - D. Shutin, T. Buchgraber, S.R. Kulkarni and H.V. Poor. "Fast Variational Sparse Bayesian Learning with Automatic Relevance Determination" IEEE Transactions on Signal Processing, Vol. 59, No. 12, pp. 6257-6261.
- T. Choi, M.R. Maurya, D.M. Tartakovsky and Shankar . Subramaniam. "Stochastic Operator Splitting Method for Biological Systems" Paper presented at the AIChE Annual Meeting, 243f, Minneapolis.
- S. Kamath, D. Tse and V. Anantharam. "Generalized Network Sharing outer bound and the Two-Unicast problem" Paper presented at the International Symposium on Network Coding (NetCod), Beijing, China.
- G. Seroussi, W. Szpankowski and M. Weinberger. "Deinterleaving Markov Processes: the Finite-Memory Switch Case" Paper presented at the 2011 International Symposium on Information Theory, St. Petersburg, Russia, July - August 2011.
- D. Zhang, J. Wang and L. Si. "Document Clustering with Universum" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) pp 873-882. (Acceptance Rate: 19.8%). 2011.
- T. Choi and W. Szpankowski. "Constrained Pattern Matching" ACM Trans. Algorithms, Vol.7, No. 2, pp. 1-25, 2011.
- S. Verdu. "The Information: A History, A Theory, A Flood" IEEE Transactions on Information Theory, Vol. 57, No. 9, pp. 6332-6333.
- M. Drmota and W. Szpankowski. "Analysis of a Block Arithmetic Coding: Discrete Divide and Conquer Recurrences" Paper presented at the 2011 International Symposium on Information Theory, 1424-1428,St. Petersburg.
- A. Gueye, J.C. Walrand and V. Anantharam. "A Network Topology Design Game: How to Choose Communication Links in an Adversarial Environment?" To appear in GameNets2011, 2nd International ICST Conference on Game Theory for Networks, April 16 -18, 2011, Shanghai, China.
- S. Srinivasan, A. Sarkar, B. Behinaein and S. Datta. "All-Spin Logic Device with Inbuilt Non- Reciprocity" IEEE Trans. On Magnetics, 47, 4026 (2011).
- R. Xiang and J. Neville. "Understanding Propagation Error and Its Effect on Collective Classification" Proceedings of the 11th IEEE International Conference on Data Mining, Vancouver, BC, December 2011.
- B. Juba, A. Kalali, S. Jhanna and M. Sudan. "Compression without a common prior: An information-theoretic justification of ambiguity in natural language" Proc. ICS, 2011.
- B. Alexeev, M. Forbes and J. Tsimerman. "Tensor Rank: Some Lower and Upper Bounds" In Proceedings of IEEE Conference on Computational Complexity 2011.
- J. Lee and C. Clifton. "How much is enough? Choosing Epsilon for Differential Privacy" The 14th Information Security Conference (ISC 2011), Xi'an, China, October 26-29, 2011.
- Y. Wu, D. Guo and S. Verdu. "Derivative of Mutual Information at Zero SNR: The Gaussian- noise Case" IEEE Transactions on Information Theory, Vol. 57, No. 11, pp. 7307-7312.
- M. Sudan. "Guest column: testing linear properties: some general theme" SIGACT News, 42(1): 59-80, March 2011.
- T. Cover. "On the St. Petersburg Paradox" to be presented at ISIT 2011, St. Petersburg, Russia, July 2011.
- D. Panigrahi. "Survivable Network Design Problems in Wireless Networks" Proceedings of the ACM-SIAM Symposium on Discrete Algorithms (SODA), 2011.
- H. Li, C. Liu, M. Rwebangira, L. Burge and W.M. Southerland. "Rapid Identification of Multi- PTMs Peptide Sequence Tags with a Graph Search Approach" Paper presented at the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2011), Atlanta, GA .
- D. Shutin, S.R. Kulkarni and H.V. Poor. "Stationary Point Variational Bayesian Attribute- Distributed Sparse Learning with l1 Sparsity Constraints" Proceedings 4th International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMPSAP '11), San Juan, Puerto Rico, December 2011.
- S. Aaronson. "A Linear-Optical Proof that the Permanent is #P-Hard" To appear in Proceedings of the Royal Society A, (2011).
- D. Zhang, F. Wang and L. Si. "Composite Hashing with Multiple Information Sources" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) pp 225-234.(Acceptance Rate: 19.8%). 2011.
- S. Srinivasan, A. Sarkar, B. Behinaein and S. Datta. "Unidirectional information transfer with cascaded All Spin Logic devices: A Ring Oscillator" Device Research Conference, June 20-22, 2011.
- R. Kalpathy, H.M. Mahmoud and M.D. Ward. "Asymptotic Properties of a Leader Election Algorithm" Journal of Applied Probability, 48, 569-575, 2011.
- V.Q. Vu, P. Ravikumar, T. Naselaris, K.N. Kay, J.L. Gallant and B. Yu. "Encoding and decoding V1 fMRI responses to natural images with sparse nonparametric models" Annals of Applied Statistics, Vol. 5, pp. 1150-1182.
- M. Drmota and W. Szpankowski. "A General Discrete Divide and Conquer Recurrence and Its Applications" Paper presented at the Proceedings SODA 2011, San Fransciso.
- T.R. Magrino, R.L. Rivest, E. Shen and D. Wagner. "Computing the Margin of Victory in IRV Elections" EVT/WOTE'11, San Francisco, CA, August 2011.
- Z. Xiang, Z. Zhang, P. Xu and P.J. Ramadge. "Learning a wavelet tree for multichannel image denoising" Paper presented at the IEEE International Conference on Image Processing, Brussels, Belgium, September 2011.
- M. Kantarcioglu, B. Xi and C. Clifton. "Classifier Evaluation and Attribute Selection against Active Adversaries" Data Mining and Knowledge Discovery 22(1-2):291-335, Springer, January 2011.
- M.J. Angilletta and M.W. Sears. "The role of evolutionary theory in predicting responses to environmental warming" Annual Meeting of the Society of Integrative and Comparative Biology, Salt Lake City, UT.
- K. Rohe, S. Chatterjee and B. Yu. "Spectral clustering and the high-dimensional Stochastic Block Model" Annals of Statistics, 39 (4), 1878-1915.
- Y. Chen, Y.C. Eldar and A.J. Goldsmith. "Approaching the Capacity of Sampled Analog Channels" Paper presented at the IEEE Information Theory Workshop, 15 - 19, Paraty, Brazil.
- S. Verdu. "Teaching Lossless Data Compression" IEEE Information Theory Society Newsletter, vol. 61, no. 1, Mar. 2011, pp. 18-19.
- A. Maduram, E. Johnson, M.J. Catanho, S. Rubakhin, D. Jones, R. Gillette and J. Sweedler. "Morphological and electrophysiological parameters of spatially complex networks of peripheral sensory neurons formed in microfluidic devices" Poster presented as part of the Society for Neuroscience Annual Meeting, Washington, DC. 2011.
- S.B. Davidson, S. Khanna, T. Milo, D. Panigrahi and S. Roy. "Provenance Views for Module Privacy" Proceedings of the ACM Symposium on Principles of Database Systems (PODS), 2011.
- A. Jain, S.R. Kulkarni and S. Verdu. "Multicasting in Large Wireless Networks: Bounds on the Minimum Energy per Bit" IEEE Transactions on Information Theory, Vol. 57, No. 1, pp.14-32, January, 2011.
- H. Li, C. Liu, M. Rwebangira, L. Burge and W.M. Southerland. "Rapid generation of peptide sequence tags with a graph search algorithm" Paper presented at the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW 2011), Atlanta, GA.
- G. Agarwal, A. Fiat, A. Goldberg, J. Hartline, N. Immorlica and M. Sudan. "Derandomization of Auctions" Games and Economic Behavior, 72(1):1-11, May 2011.
- D. Zhang, J. He, Y. Liu, L. Si and R.D. Lawrence. "Multi-View Transfer Learning with a Large Margin Approach" International ACM SIGKDD Conference on Knowledge Discovery and Data Mining (SIGKDD) pp 1208-1216. (Acceptance Rate: 17.5%). 2011.
- C. He, D. Hong and L. Si. "A Weighted Curve Fitting Method for Result Merging in Federated Search" International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR) (Poster) (Acceptance Rate 33.2%).
- T. Wang, J. Neville, B. Gallagher and E. Elliassi-Rad. "Correcting Bias in Statistical Tests for Network Classifier Evaluation" In Proceedings of the 21st European Conference on Machine Learning, 2011.
- H. Asnani, H.H. Permuter and T. Weissman. "To Observe or Not to Observe the Channel State" Proc. 48th Annu. Allerton Conf. Communication, Control, and Computing, Monticello, IL, September 29 - October 1, 2010 (invited).
- H. Li, C. Liu, X. Liu, M. Diakite, L.L. Burge III, A. Yakubu and W.M. Southerland. "Peptide Sequence Tag-Based Blined Identification-based SVM Model" ICMLA 2010: 972-984.
- J. Yu, H. Zheng, S.R. Kulkarni and H.V. Poor. "Two-Stage Outlier Elimination for Robust Curve and Surface Fitting" EURASIP Journal on Advances in Signal Processing, vol. 2010, Article ID 154891, 13 pages.
- Y. Polyanskiy and S. Verdu. "Arimoto Channel Coding Converse and Renyi Divergence" Forty-Eighth Annual Allerton Conference, University of Illinois at Urbana-Champaign, Monticello, Illinois, Sep 29-Oct. 1, 2010.
- V. Begosian, E.C. Hellgren, M.W. Sears and R.W. Moody. "Application of ecological niche modeling to translocation efforts" Annual meeting of The Wildlife Society, Snowbird, UT.
- A. Cornejo and N. Lynch. "Reliably Detecting Connectivity Using Local Graph Tarits" International Conference on Principles of Distributed Systems (OPODIS), Tozeur, Tunisia, Dec. 2010.
- Y. Qi and M.J. Atallah. "Identifying Interesting Instances for Probabilistic Skylines" Proceedings of the 21st International Conference and Workshop on Database and Expert Systems Applications (DEXA 2010), Pages 300-314, 2010.
- V. Deshpande, L. Schwarz, M. Atallah, M. Blanton and K. Frikken. "Outsourcing Manufacturing: Secure Price-Masking Mechanisms ofr Purchasing Component Parts" Production and Operations Mangement Society (POMS) Journal, special issue on Operations Mangement in Business-to-Business markets, Oct 2010, published online.
- A. Bhattacharyya, S. Kopparty, G. Schoenebeck, M. Sudan and D. Zukerman. "Optimal Testing of Reed-Muller Codes" Proceedings of the 51th Annual IEEE Symposium on Foundations of Computer Science (FOCS 2010), pages 488-497, October 2010.
- A. Lutomirski, S. Aaronson, E. Farhi, D. Gosset, J. Kelner, A. Hassidim and P.W. Shor. "Breaking and Making Quantum Money: Toward a New Quantum Cryptographic Protocol" In Proceedings of Innovations in Computer Science (ICS) 2010, p. 20-31.
- P. Jacquet and W. Szpankowski. "Noisy Constrained Capacity for BSC" IEEE Trans. Information Theory, 2010, vol. 56, pp. 5412-5423.
- R. Ma, D. Kim, M. McCormick, T.P. Coleman and J. Rogers. "A Stretchable Electrode Array for Non-invasive, Skin-Mounted Measurement of Electrocardiography (ECG), Electromyography (EMG) and Electroencephalography (EEG)" IEEE International Conference of the Engineering in Medicine and Biology Society, Pages 6405-6408, September 2010.
- P. Jacquet, C. Knessl and W. Szpankowski. "Counting Markov Types" 2010 International Conference on Anaysis of Algorithms, Vienna, 2010, pp. 389-402.
- H. Ebeid, S. Gorantla and T.P. Coleman. "A Necessary Condition for Reliable Communication with Feedback Based Upon Lyapunov Exponents of Dynamical Systems" Military Communications Conference (MILCOM), Invited Paper, November 2010.
- P. Cuff, H. Permuter and T. Cover. "Coordination Capacity" IEEE Trans. on Info. Theory, Sept. 2010.
- S.R. Kulkarni and G. Harman. "An Elementary Introduction to Statistical Learning Theory" Wiley, Aug. 2010.
- M. Khabbazian, D. Kowalski, F. Kuhn and N. Lynch. "Decomposing Broadcast Algorithms Using Abstract MAC Layers" Proceedings of Sixth ACM SIGACT/SIGMOBILE International Workshop on Foundations of Mobile Computing (DIALM-POMC 2010), Cambridge, MA, 2010.
- S. Verdu. "Mismatched Estimation and Relative Entropy" IEEE Trans. Information Theory, Aug 2010, vol. 56, no. 8, pp. 3712-3720.
- S. Minnikanti, D.R. Reyes and R.C. Aguilar. "Microfluidic based contactless dielectrophoretic device: Modeling and analysis" Conf Proc IEEE Eng Med Bio Soc.:6506-9.
- Y. Polyanskiy and S. Verdu. "Channel Dispersion and Moderate Deviations Limits for Memoryless Channels" Forty-Eighth Annual Allerton Conference, University of Illinois at Urbana-Champaign, Monticello, Illinois, Sep. 29-Oct. 1, 2010.
- C.J. Quinn, T.P. Coleman and N. Kiyavash. "Approximating discrete probability distributions with causal dependence trees" IEEE International Symposium on Information Theory and its Applications (ISITA), Oct. 2010.
- D.K. Kaynar, N. Lynch, R. Segala and F. Vaandrager. "The Theory of Timed I/O Automata" Synthesis Lectures on Computer SCience, Morgan Claypool Publishers, 2010. Second Edition.
- M.D. Ward. "Asymptotic Rational Approximation to Pi: Solution of an "Unsolved Problem" Posed by Herbert Wilf" Discrete Mathematics and Theoretical Computer Science, 2010, vol. AM, pp. 591-602.
- B. Asadi, M.R. Maurya, D.M. Tartakovsky and S. Subramaniam. "Comparison of Statistical and Optimization-based Methods for Data-Driven Network Reconstruction of Biochemical Systems" In the proceedings of the IASTED International Conference (CompBio 2010), Cambridge, MA, USA, November 1-3, pp 587-592, 2010.
- K. Censor-Hillel and H. Shachnai. "Partial Information Spreading with Application to Distributed Maximum Coverage" Submitted for journal publication (prelimiary version appeared in PODC 2010).
- E. Stefanov and M. Atallah. "Duress Detection for Authentication Attacks Against Multiple Administrators" 2010 ACM CCS Workshop in Insider Threats (WITS 10), Chicago, Oct. 2010.
- T. Weissman. "The Relationship Between Casual and Non-Casual Mismatched Estimation in Continuous-Time AWGN Channels" IEEE Trans. Information Theory, August 2010.
- W. Szpankowski and M. Weinberger. "Minimax Redundancy for Large Alphabets" 2010 International Symposium on Information Theory, Austin, 2010, 1488-1492.
- T. Weissman. "Capacity of Channels with Action-Dependent Sates" IEEE Trans. Information Theory, November 2010.
- Y. Wu and S. Verdu. "The Impact of Constellation Cardinality on Gaussian Channel Capacity" Forty-Eighth Annual Allerton Conference, University of Illinois at Urbana-Champaign, Monticello, Illinois, Sep. 29-Oct. 1, 2010.
- Y. Wu and S. Verdu. "Renyi Information Dimension: Fundamental Limits of Almost Lossless Analog Compression" IEEE Trans. Information Theory, Aug 2010, vol. 56, no. 8, pp. 3721-3747.
- J. Yu, H. Zheng, S.R. Kulkarni and H.V. Poor. "A Cross-Validation approach to Trajectory and Shape Reconstruction for Rigid Bodies" Proceedings of the 20th International Workshop on Machine Learning for Signal Processing, Kittila, Finland, Aug. 29 - Sep. 1, 2010.
- S.K. Gorantla, S. Kadloor, T.P. Coleman, N. Kiyavash, I.S. Moskowitz and M.H. Kang. "Directed information and the NRL Network Pump" IEEE International Symposium on Information Theory and its Applications (ISITA), Oct. 2010.
- M. Fresia, F. Perez-Cruz, H.V. Poor and S. Verdu. "Joint Source-Channel Coding" IEEE Signal Processing Magazine, Nov. 2010, vol. 27, no. 6, pp. 104-113.
- S.K. Gorantla and T.P. Coleman. "A Stochastic Control Approach to Coding with Feedback over Degraded Broadcast Channels" IEEE Conference on Decision and Control (CDC), December 2010.
- C. Liu, H. Liu, A. Leonce, L.L. Burge III, J. Trimble, P. Keiller and A. Yakubu. "A Heuristic Algorithm for Finding the Longest Pathways in a Biochemical Network" ICMLA 2010: 515-522.
- H.H. Permuter, H. Asnani and T. Weissman. "Multiple Access Channel with Partial- Cribbing Encoders" Proc. 26th IEEE Conf. Electrical and Electronics Engineers (IEEEI 2010), Eilat, Israel, November 17-20th, 2010.
- M. Rwebangira. "On Ranking Senators by Their Votes" 2nd World Congress on 155 Computer Science and Information Engineering, 2009.
- J. Jia, K. Rohe and B. Yu. "The Lasso under Heteroscadecity" Statistica Sinica (2002).
- T.C. Cukur, A.G. Huth, S. Nishimoto and J.L. Gallant. "Functional Subdomains Within Human FFA" Journal of Neuroscience. (in press).
- K. Kim and P.R. Kumar. "Intersection Crossing: An MPC-based Approach for Provable Systemwide Safety and Liveness of Autonomous Ground Traffic" Submitted to IEEE Transactions on Automatic Control.
- R. Mirghaderi, A. Goldsmith and T. Weissman. "Achievable Error Exponents in the Gaussian Channel with Rate-Limited Feedback" submitted to IEEE Transactions on Information Theory.
- S. Rini. "An Achievable Region for a General Multi-terminal Network and the corresponding Chain Graph Representation" Submitted to IEEE Transactions on Information Theory.
- S. Cetintas, L. Si, S. Chakravarty, H. Aagard and K. Bowen. "Learning to Identify Students? Relevant and Irrelevant Questions in a Micro-Blogging Supported Classroom" Twenty-Fourth Conferences on Artificial Intelligence (ITS), (Short Paper).
- G. Kollias, E. Gallopoulos and A. Grama. "Functional rankings with multidamping: Generalizing PageRank with inhomogeneous matrix products" IEEE Transactions on Knowledge and Data Engineering (TKDE) (submitted).
- F. Kuhn, T. Locher and R. Oshman. "Gradient Clock Synchronization in Dynamic Networks" To appear in Theory of Computing Systems.
- D. Baron and T. Weissman. "An MCMC Approach to Universal Lossy Compression of Analog Sources" submitted to IEEE Trans. Sig. Proc.
- G. Kollias, M. Sathe, O. Schenk and A. Grama. "Parallel Algorithms for Graph Similarity" Parallel Computing (Submitted).
- F. Kuhn, N. Lynch and C. Newport. "The Abstract MAC Layer" To appear in special issue of Distributed Computing.
- M. Gopaladesikan, H. Mahmoud and M.D. Ward. "Building Random Trees from Blocks" Probability in the Engineering and Informational Sciences, in press.
- A. Gupta, S. Verdu and T. Weissman. "Rate-Distortion in Near-Linear Time" submitted to Problemy Peredachi Informatsii.
- K. Kim and P.R. Kumar. "An Overview and Some Challenges of Cyber-Physical Systems" To appear in Journal of the Indian Institute of Science.
- K. Censor-Hillel, B. Haeupler, J.A. Kelner and P. Maymounkov. "Global Computation in a Poorly Connected World: Fast Rumor Spreading with No Dependence on Conductance" In preperation..
- J.I. Kim, H. Song, S. Sunkara, A. Lali and D. Ramakrishna. "Do Microbes Have a Survival Strategy?" PNAS, Submitted.
- A. Drucker. "Block-Sensitvity of Minterm-Transitive Functions" To appear in Theorectical Computer Science.
- M. Levorato, S. Firouzabadi and A. Goldsmith. "A Learning Framework for Cognitive Interference Networks with Partial and Noisy Observations" Submitted to IEEE Trans. on Wireless Communications.
- K.J. Astrom and P.R. Kumar. "Control: A Perspective" Submitted to Automatica. Invited Paper.
- T. Moon, T. Weissman and J.Y. Kim. "Discrete Denoising of Heterogenous Two-Dimensional Data" submitted to IEEE Trans. on Pattern Analysis and Machine Intelligence (TPAMI).
- C. Sims. "Discrete Actions in Information-Constrained Tracking Problems" joint with Filip Matejka (recent PhD in applied math from Princeton).
- Y. Qi and F. Yan. "EigenNet: A Bayesian hybrid of generative and conditional models for sparse learning" In Advances in Neural Information Processing Systems, 9 pages.
- F. Farnoud, B. Touri and O. Milenkovic. "Novel Distance Measures for Constrained Vote Aggregation" In submission to Journal of Mathematical Social Sciences.
- L. Xie, Y. Chen and P.R. Kumar. "Dimensionality Reduction of Synchrophasor Data for Early Anomaly Detection: Linearized Analysis" Submitted to IEEE Transactions on Power Systems.
- S. Cetintas, L. Si, Y.P. Xin and C. Hord. "Predicting Correctness of Problem Solving in ITS with a Temporal Collaborative Filtering Approach" Twenty-Fourth Conferences on Artificial Intelligence (ITS).
- I. Shomorony, T. Courtade, D. Tse. "Efficient Construction of Sparse String Graphs" Probabilistic Modeling in Genomics, Cold Spring Harbor.